PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00022790-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | TCP | ||||||||
Protein Properties | Length: 75aa MW: 8286.57 Da PI: 11.7216 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 37.9 | 6.3e-12 | 42 | 75 | 2 | 35 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdL 35 g+ dr sk+ T++g+ dRRvRls+++a++f+dL SMil_00022790-RA_Salv 42 SGGNDRYSKVLTSKGLQDRRVRLSMNTAIQFYDL 75 5789*****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.1E-12 | 43 | 75 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 13.816 | 44 | 75 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MTLIPCVHIS RPNATGGGVR NSGVGMFYGW PSSRIVRVLR ASGGNDRYSK VLTSKGLQDR 60 RVRLSMNTAI QFYDL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012830233.1 | 3e-23 | PREDICTED: transcription factor TCP2-like | ||||
Swissprot | Q9C758 | 3e-18 | TCP24_ARATH; Transcription factor TCP24 | ||||
TrEMBL | A0A4D9B1Y1 | 7e-23 | A0A4D9B1Y1_SALSN; Uncharacterized protein | ||||
STRING | Migut.H01353.1.p | 1e-22 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2464 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 1e-20 | TCP family protein |
Publications ? help Back to Top | |||
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