PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00022751-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Nin-like

Protein Properties

Length: 364aa MW: 41091.7 Da PI: 10.0165

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00022751-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	71.3	1.3e-22	276	324	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++l dl+kyF+lpi++AAke+++c++++K CR+ G+kRWPhRkiks+ SMil_00022751-RA_Salv 276 KMRLRDLAKYFHLPINAAAKEMKLCPSAIKSVCRKEGLKRWPHRKIKSI 324 7899*******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.608	264	344	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-19	277	324	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
KKLLHCNTNA NKARRRGAWL TPSVATTAAA AGRPHKNGGP NFRCSTTQSP TRHRRDFQRR 60 TVTVSRRRDG PATLCSRRVN GMIEEMSGDA NYGTNSPQFC SVHENAVSNQ TAQFADLPPP 120 PAFGNPMRVP VWPVPPSPYS CSCCQTLREI FHVNGSQVLK LGIHGRLWHI SHAVLERFDS 180 KSSPENHEYY IFCNESIGNV KQFLIQYCND RKLEGFIMLQ DPLSNFYDAL CTGCFHHHQS 240 SQGDGHEGEV SRLEEEGNGV RLPKSYIASQ RERAGKMRLR DLAKYFHLPI NAAAKEMKLC 300 PSAIKSVCRK EGLKRWPHRK IKSIKNEIAK MSKSINSADG SEKSRLAIEM QRLERELGAF 360 YQEK

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

KKLLHCNTNA NKARRRGAWL TPSVATTAAA AGRPHKNGGP NFRCSTTQSP TRHRRDFQRR  60
TVTVSRRRDG PATLCSRRVN GMIEEMSGDA NYGTNSPQFC SVHENAVSNQ TAQFADLPPP  120
PAFGNPMRVP VWPVPPSPYS CSCCQTLREI FHVNGSQVLK LGIHGRLWHI SHAVLERFDS  180
KSSPENHEYY IFCNESIGNV KQFLIQYCND RKLEGFIMLQ DPLSNFYDAL CTGCFHHHQS  240
SQGDGHEGEV SRLEEEGNGV RLPKSYIASQ RERAGKMRLR DLAKYFHLPI NAAAKEMKLC  300
PSAIKSVCRK EGLKRWPHRK IKSIKNEIAK MSKSINSADG SEKSRLAIEM QRLERELGAF  360
YQEK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081629.1	1e-112	uncharacterized protein LOC105164634 isoform X1
TrEMBL	A0A4D9AEB0	1e-139	A0A4D9AEB0_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3505	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	8e-12	Nin-like family protein