PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00022618-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB_related | ||||||||
Protein Properties | Length: 194aa MW: 21707.4 Da PI: 5.3671 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32 | 2.8e-10 | 68 | 111 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrw 44 +WT eEd+ + +a + + ++ W++Ia ++ g+t +++k+++ SMil_00022618-RA_Salv 68 SNWTREEDKAFENALATYYNDadMWDKIALAVP-GKTIEDLKLHY 111 58*******************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.701 | 62 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-6 | 66 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-8 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.92E-8 | 69 | 111 | No hit | No description |
SuperFamily | SSF46689 | 1.08E-9 | 69 | 121 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-6 | 69 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MKHSVLFAAY HTKCGFVVVT LDVMVCADAS VGQAFPIASK MDTDWTFDSC SLRTEVDDAA 60 SKDACTSSNW TREEDKAFEN ALATYYNDAD MWDKIALAVP GKTIEDLKLH YEILRRDVEA 120 IESGKVPLPD NPTKASTLKE KKKSEQAQRG DPWTEEEHSQ VASHAQKYFK RLSSAKEGKR 180 LSINDITTVN PEKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-16 | 70 | 143 | 11 | 85 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853388.1 | 2e-46 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 4e-23 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2G9H9E6 | 1e-53 | A0A2G9H9E6_9LAMI; Zuotin | ||||
STRING | Migut.N03245.1.p | 8e-46 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15159 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11280.2 | 4e-28 | MYB family protein |
Publications ? help Back to Top | |||
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