PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00022543-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 20971.8 Da PI: 8.0151 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.4 | 1.1e-28 | 4 | 103 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C++dC l p++ p++q++++ +++k++G++ +l+l++a+p ++r+++++sl+yeA+ r+ +Pv+G+vg+++++ SMil_00022543-RA_Salv 4 SCNGCRVLRKGCSEDCSLKPCLewlnsPQSQANATLFLAKFYGRAGLLNLIAAAPSHRRPEIFRSLLYEACGRIINPVHGSVGLMSSG 91 6*************************************************************************************** PP DUF260 84 qqqleqlkaela 95 + +++++e++ SMil_00022543-RA_Salv 92 DWPRCHAAVEAV 103 **9999998876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.096 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-23 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MRISCNGCRV LRKGCSEDCS LKPCLEWLNS PQSQANATLF LAKFYGRAGL LNLIAAAPSH 60 RRPEIFRSLL YEACGRIINP VHGSVGLMSS GDWPRCHAAV EAVLGGVHLV SPCDIRHAPK 120 GRDRRKRSTS SAAAESEAKF TITGWDHNKD LLVIDEKSGR APSHDSFSAE TVEPSLMSFD 180 DQGTIPEPRL SE |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070804.1 | 7e-82 | LOB domain-containing protein 40-like | ||||
Swissprot | Q9CA30 | 9e-57 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A4D9AI99 | 2e-85 | A0A4D9AI99_SALSN; Uncharacterized protein | ||||
STRING | Migut.E00341.1.p | 3e-74 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68510.1 | 2e-58 | LOB domain-containing protein 42 |