PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022510-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 228aa    MW: 24682.6 Da    PI: 9.3366
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022510-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.7e-13100144347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +W++eE+  ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
  SMil_00022510-RA_Salv 100 AWSEEEHRTFLIGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 144
                            7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.104.5E-4321IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.41893149IPR017930Myb domain
SuperFamilySSF466895.07E-1795150IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-1796147IPR006447Myb domain, plants
SMARTSM007176.9E-997147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-1198143IPR009057Homeodomain-like
CDDcd001672.57E-8100145No hitNo description
PfamPF002491.4E-10100144IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCNA SKGPNNIAGV VRLFGVQLDI SSNSVSSSSS CSIPIKKSFS  60
LDCLSSSSSS SSRPVAHKPS LGYLSDEPLG RPPDRKKGVA WSEEEHRTFL IGLEKLGKGD  120
WRGISRNFVT TRTPTQVASH AQKYFLRLAS LNKKKRRSSL FDIDMVGDSK DSKHHFEFDV  180
DLNSLGHDEG RDFPPSWASD SPELELTLSA PNSSSSSSSL LIGAISVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152156KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093715.12e-80transcription factor KUA1-like
SwissprotQ7XC571e-43MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A4D9A5S42e-95A0A4D9A5S4_SALSN; Uncharacterized protein
STRINGEOY304922e-72(Theobroma cacao)
STRINGMigut.J00595.1.p4e-72(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33852147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.15e-53MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]