PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00022442-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 660aa MW: 76495.3 Da PI: 8.9433

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00022442-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.3	4e-21	26	119	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 Y Y++++GF+vrk +++k + g+i+ +tfvC +eg + ++++ ++++rr++++tr++C+a++ +k++++g++ v+ +++ SMil_00022442-RA_Salv 26 LYGLYGYSCGFDVRKGTTRKG-KYGQIIYQTFVCIREGINLGTNDEhaetqsKTRKRRRKPSTRCDCRANVIMKRRDNGEYFVSVFNE 112 6999***********9998.6677********99777666778888899999************************** PP FAR1 84 eHnHela 90 HnH+l SMil_00022442-RA_Salv 113 AHNHKLI 119 ***96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-18	26	119	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.5E-28	212	303	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.668	496	528	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence Send to blast
MPIADDVSRL PYVGQVFSSL DEAFDLYGLY GYSCGFDVRK GTTRKGKYGQ IIYQTFVCIR 60 EGINLGTNDE HAETQSKTRK RRRKPSTRCD CRANVIMKRR DNGEYFVSVF NEAHNHKLIS 120 EDCRHFMKYN RKVDSSHQLI MLKCAKVNIG PMRAFRLFKE LVGGYEYVGC TSNDFKKNSY 180 QMNSYPDGSD AQLLLDRLIT NRDLDDQFKY SVSFDATYTT NRYSMIFVPF TGKDNHGGCV 240 TFAAGLLTRE DVHSYSWILK QFVDCMGHSP TMLIIDQDPA LKIAVENVMP DTRHRFCMWH 300 IMMKVALKLP ISLRENADLT SRLYEVAWSE LDEPREFEEK WLGVINEYGL ADNSWFSDMF 360 SKRKYWIPQY FRDLRMSGLF RTTSMSESEN SFFRKYLNRN SNLASFYIHY ESAMQAQRHS 420 YKQLCMTDQT TTPKLKTHTH IEQHASRIYT TKIFLDVQIE ITEAFNRCRI KSMDTAHEDH 480 MYAVDDRSNG VSNVAYNMVA DTFICSCKLF VKKGLVCRHM FVVMHNIGLK AIPEKYILDR 540 WRQNVGAHFI SNGQTQASNK PLMSEVFRCI AIADGNEELS TSLIAELKKW ADANEPRSLN 600 SANSKERIFQ MFYGSKLPTE ITIHPPDPVK TKGSGKRLKS TYEKELQKAK KQRGVSEMWT

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence Send to blast

MPIADDVSRL PYVGQVFSSL DEAFDLYGLY GYSCGFDVRK GTTRKGKYGQ IIYQTFVCIR  60
EGINLGTNDE HAETQSKTRK RRRKPSTRCD CRANVIMKRR DNGEYFVSVF NEAHNHKLIS  120
EDCRHFMKYN RKVDSSHQLI MLKCAKVNIG PMRAFRLFKE LVGGYEYVGC TSNDFKKNSY  180
QMNSYPDGSD AQLLLDRLIT NRDLDDQFKY SVSFDATYTT NRYSMIFVPF TGKDNHGGCV  240
TFAAGLLTRE DVHSYSWILK QFVDCMGHSP TMLIIDQDPA LKIAVENVMP DTRHRFCMWH  300
IMMKVALKLP ISLRENADLT SRLYEVAWSE LDEPREFEEK WLGVINEYGL ADNSWFSDMF  360
SKRKYWIPQY FRDLRMSGLF RTTSMSESEN SFFRKYLNRN SNLASFYIHY ESAMQAQRHS  420
YKQLCMTDQT TTPKLKTHTH IEQHASRIYT TKIFLDVQIE ITEAFNRCRI KSMDTAHEDH  480
MYAVDDRSNG VSNVAYNMVA DTFICSCKLF VKKGLVCRHM FVVMHNIGLK AIPEKYILDR  540
WRQNVGAHFI SNGQTQASNK PLMSEVFRCI AIADGNEELS TSLIAELKKW ADANEPRSLN  600
SANSKERIFQ MFYGSKLPTE ITIHPPDPVK TKGSGKRLKS TYEKELQKAK KQRGVSEMWT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	82	RKRRR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-70	FAR1-related sequence 5