PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022320-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 339aa    MW: 37726.8 Da    PI: 4.7493
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022320-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.000313956219
                           HHHHHHHHHHHHHHHHHH CS
                    HLH  2 rrahnerErrRRdriNsa 19
                           r +h+e E+rRR++iN++
  SMil_00022320-RA_Salv 39 RSKHSETEQRRRSKINER 56
                           899*************86 PP
2HLH25.91.8e-08771101855
                            HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            ++f+ Lr+l+P++    ++K +Ka+ L ++++YI+ Lq
  SMil_00022320-RA_Salv  77 DRFQILRDLIPEN----DQKRDKASFLLEVIQYIQFLQ 110
                            89**********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.7E-1935127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.77237109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.57E-1339114No hitNo description
SMARTSM003530.007243115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-1077125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-677110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
LDLQQEMGRT ASHVEDEETH DSSSPTDYKR VDQKANALRS KHSETEQRRR SKINERQAFN  60
FILFLFLSPC LGCFRSDRFQ ILRDLIPEND QKRDKASFLL EVIQYIQFLQ EKLQMYEGSC  120
QGWSSESTKC LPLRINSGPD ESFVDQTQFE RNFYGHEDNV HPVLLSNAQN SVESDLTGVT  180
LYKSAVNPPM TTQALAMAMP LPAAIFESLP GQPHQGSFTE ADQLNFWQGR SCADDCSVPV  240
YSANGEELKS ESGEASISNV YSQGLLNSLK CSLQSSGVDL SQTNISVQLD VGKQTTGGNT  300
NPVISIKDQE NASGLCYGSS INVGKSYEHP SKRLRGDET
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574970.0KP257497.1 Salvia miltiorrhiza clone 64 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085580.11e-155transcription factor BIM2 isoform X2
TrEMBLA0A0H3YB410.0A0A0H3YB41_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.H00581.1.p1e-106(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89471821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-43BES1-interacting Myc-like protein 2