PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00022262-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB_related | ||||||||
Protein Properties | Length: 613aa MW: 67485.3 Da PI: 8.4735 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 7.6e-09 | 485 | 532 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +l+++v q+G g+W++I + + +Rt ++k++w+++l SMil_00022262-RA_Salv 485 WTISEVRKLIEGVSQYGVGRWSRIKKLFFsasAHRTSVDLKDKWRNLL 532 9*********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.155 | 477 | 536 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-13 | 478 | 535 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.66E-16 | 479 | 534 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-10 | 481 | 534 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-7 | 485 | 532 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 7.97E-20 | 485 | 533 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MENGHPSLGL EDGPIDVEDL LVEPQGGHLS MDSVICFDEK IPNNAMGIGH VSRSSGGSDT 60 GIAQEGKDIL NGEVLNAMPI EAEDGYFQLE NDFCNMGDEY LLGVEFAESI TNLDYGSSEG 120 LQASASDCQI QVSTDGSDTG CRSDLYRTGD LRKCQNSHSV GSSKFGDTPS RRECGTLDGE 180 NPTVSPRSCT LRKSGKSQNS SSSSFLDVLS DENDGRFSRA GEMFFSPKTK RNYDFELTGQ 240 NGATNANEGQ ETLVTASVQA SSSNVLTQKR SRKPTQRYID ALVDPISTHS KRRREVSSSS 300 SIKDKSRGNK DHRKCHVGPK AIKVPPEDPE ESSVIAIQVP FGSLANKECS ESQACDMVQR 360 MECRNSMTKL KGKYVTLNNT LDKSVMTVDL KIRGDCGTGP KKTDSCVTEA ASKKKDGHAA 420 AKNPKKRNDF TISVIRKKRD DCFTTETPNK RDNSRAVVHQ MKRDDALIAE STEEASGRRK 480 HHRLWTISEV RKLIEGVSQY GVGRWSRIKK LFFSASAHRT SVDLKDKWRN LLKASGMQEQ 540 GSQQGEKKRN LAWRPLPKSI LRRVCELATM HPYPKGERGG NVGAARIGHD SPDRSTDITL 600 SDYRRILRSI NGN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 424 | 438 | KKRNDFTISVIRKKR |
2 | 476 | 483 | GRRKHHRL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077333.1 | 0.0 | uncharacterized protein LOC105161373 isoform X1 | ||||
TrEMBL | A0A4D8ZZS3 | 0.0 | A0A4D8ZZS3_SALSN; Uncharacterized protein | ||||
STRING | Migut.L01689.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9155 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 8e-25 | TRF-like 6 |