PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022205-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ARF
Protein Properties Length: 830aa    MW: 91717.1 Da    PI: 6.6501
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022205-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.71.2e-24133234199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+
  SMil_00022205-RA_Salv 133 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQTPPA--QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVI 218
                            99****************************97544444..48********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++ +l+++++r+
  SMil_00022205-RA_Salv 219 FI--WNENNQLFLGIRRA 234
                            **..7888889****997 PP
2Auxin_resp121.46.8e-40259342183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  SMil_00022205-RA_Salv 259 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 342
                            79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-49118262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-43126248IPR015300DNA-binding pseudobarrel domain
CDDcd100179.50E-23132233No hitNo description
SMARTSM010198.2E-26133235IPR003340B3 DNA binding domain
PROSITE profilePS5086313.281133235IPR003340B3 DNA binding domain
PfamPF023624.7E-23133234IPR003340B3 DNA binding domain
PfamPF065079.5E-35259342IPR010525Auxin response factor
SuperFamilySSF542773.34E-5755830No hitNo description
PROSITE profilePS5174523.118762830IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MRLSSSSSTG SGFNAQAEEG EKKCLNSELW HACAGPLVSL PQLGSRVVYF PQGHSEQVAA  60
STNKEVDGAI PNYPGLQPQL ICQLHNVTMH ADVETDEVYA QMTLQPLTPQ EQKDICLLPS  120
ELGTPSKQPT NYFCKTLTAS DTSTHGGFSV PRRAAEKVFP PLDYSQTPPA QELIAKDLHG  180
NEWKFRHIFR GQPKRHLLTT GWSVFVSAKR LVAGDSVIFI WNENNQLFLG IRRANRPQTV  240
MPSSVLSSDS MHIGLLAAAA HAAATNSRFT IFYNPRASPS EFVIPLAKYA KAVYHTRVSV  300
GMRFRMLFET EESSVRRYMG TITGISDLDP VRWPNSHWRS VKVGWDESTA GERQPRVSLW  360
EIEPLTTFPM YPSPFSLRLK RPWPSGLPSF PGLKDGDMGM NSPMTWLRGG VRDQGVQSLN  420
FQGVSPWMQP RLDASMLCLQ PDIYQVMAAA AMQDAGSLDP SKLSNQSFLQ FQQNVPNVSA  480
SLLQNQMLQH PHSQPSFLQN LPENSVVSQA QMLHQQLQGR QSFINQQQQQ QLLNQQLNPQ  540
FQDQQLKKSI PTSLQMGLAS ESQFTPVQAL SSTSQLQNFS DLIGNHMASS NNSSMQSILS  600
SFSREGASPH ANMNGSHPLV SHSSSKRVAL DPQLPSKVSQ FGVPHPEELV TPNSKVSDLS  660
ALLPPFHGKE FSDFQGVAHS HDNLLFGVGT DSSANMLTGM SNLRNSSNEN ESLSMPYATP  720
TFPSGAGTEF PLNSDMTTSS CVDESGYMQS SENVDQTNPT SRAFVKVHKS GSFGRSLDIS  780
KFSSYPELRS ELARMFGLEG LLEDPQRSGW QLVFVDREND ILLLGDDPWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1602136347388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0367440.0KX036744.1 Salvia miltiorrhiza auxin response factor ARF24 (ARF) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085439.10.0auxin response factor 6-like isoform X2
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A191T8U40.0A0A191T8U4_SALMI; Auxin response factor
STRINGXP_009757615.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]