PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022163-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 330aa    MW: 36269.6 Da    PI: 4.958
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022163-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.77.9e-14206241134
                   GATA   1 CsnCg..ttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                            C++Cg   t+Tp +Rrgp g++tLCnaCGl+++ kg
  SMil_00022163-RA_Salv 206 CQHCGicETSTPAMRRGPKGPRTLCNACGLMWANKG 241
                            *****55577***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.3E-767102IPR010399Tify domain
PROSITE profilePS5132012.94267102IPR010399Tify domain
PfamPF062005.2E-1073101IPR010399Tify domain
PROSITE profilePS5101712.779138180IPR010402CCT domain
PfamPF062037.7E-16138180IPR010402CCT domain
SuperFamilySSF577167.13E-10199246No hitNo description
SMARTSM004019.0E-7200248IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.104203246IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.3E-13204245IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.37E-13205249No hitNo description
PfamPF003201.2E-11206241IPR000679Zinc finger, GATA-type
PROSITE patternPS003440206233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
LHSRMDAGKG MPFENASMPI RVHENGGGFD ADDISGGGDD TMISAEEMST PIAATPVNSQ  60
SSQQRLSASR CSELTISFEG EVYVFPAVTP EQVQEVLLLL GGREMPTGIP NTEFLLQISD  120
KGVVGVDDDS SQPTVSRRIA SLERFREKRK ERCFDKKIRY TCRKEVAQRM LRKNGQFASV  180
KDMCKISHDN WNPGNSTQPE PVLRRCQHCG ICETSTPAMR RGPKGPRTLC NACGLMWANK  240
GNLKDLGKGG RHTFEQTEPA CDVLEPLEIK PPATETANSY CNQDEEELME ISERTAGSSI  300
GIENSSRNLG EQDEVTNVCG TANFDQQVCS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835385.11e-128PREDICTED: GATA transcription factor 28-like isoform X3
SwissprotQ8GXL71e-58GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A068TMB91e-105A0A068TMB9_COFCA; Uncharacterized protein
STRINGMigut.N01100.1.p1e-126(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-42ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]