PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00022108-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | GRAS | ||||||||
Protein Properties | Length: 541aa MW: 59758.2 Da PI: 5.3573 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 408.7 | 5.6e-125 | 161 | 541 | 2 | 374 |
GRAS 2 velLlecAeavssgdle..........laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 +lL++cAe vs+ d+ +a+al+ l++ +s +g+p qRl ay++e+L+arl++s+s +yk+l+++e + sse ++ SMil_00022108-RA_Salv 161 NQLLVACAEIVSEADTIsmsdrqvaisAAEALMDILEKKVSVSGEPAQRLGAYMLEGLRARLLSSGSIIYKKLKCKEPT---SSEMMS 245 68999999999996653333344666689999999*******************************************9...99**** PP GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerL 165 ++ ++++++P++kf+++ N I ea+e+e+r+HiiDf+i qG QW++L+qaL+ R++gpp +RiTgv++++s + le +g++L SMil_00022108-RA_Salv 246 YMGVLYQICPYYKFAYMSSNVIIGEAMENESRIHIIDFQIAQGSQWISLIQALSRRAGGPPFIRITGVDDSQSAhaRGGGLELVGQKL 333 **********************************************************************9988889999******** PP GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 a++Ae++gvpfefn +a + +++le+L+v++gEalaVn+ + lh+++desvs++++rd++L+l+kslsPk+v++veqe+++n+++F SMil_00022108-RA_Salv 334 AQLAESCGVPFEFNG-AAMSGCQVQLEHLKVRHGEALAVNFPYILHHMPDESVSTANHRDRLLRLMKSLSPKIVTLVEQESNTNTSTF 420 ***************.8999******************************************************************** PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341 ++rf+e+l+yy+a+f+s++a+ pr++++ri+ E++++++++vn++aceg er+erhe ++kWr+rle+aGF++++ls ++ ++++ +l SMil_00022108-RA_Salv 421 AQRFCETLDYYTAMFESIDAGRPRDDRQRISAEEHCVAKDVVNIIACEGIERVERHELFGKWRMRLEMAGFSQLRLSPSVSNSVRDML 508 **************************************************************************************** PP GRAS 342 rkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374 ++++s+ yr+ e +g+l+lgWk+r+L + SaWr SMil_00022108-RA_Salv 509 KEYSSN-YRIAEGgNGALYLGWKNRALATSSAWR 541 ****77.***988578888**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.142 | 134 | 521 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-122 | 161 | 541 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MQTSQTSASF QSFYNQPMQQ VDPYGSSTGS RSQGTEVSFQ TCPDQFFTLE STPATDYATY 60 SSPSAVSVSS SRSPFSPQGS QSYASDLYQP SDNTYGSPLS GSSGVDDENK LLHALWVLRN 120 ELLGPESDTD DSGTFNGVVT QPSPFTRYNK ILEMAPHMDL NQLLVACAEI VSEADTISMS 180 DRQVAISAAE ALMDILEKKV SVSGEPAQRL GAYMLEGLRA RLLSSGSIIY KKLKCKEPTS 240 SEMMSYMGVL YQICPYYKFA YMSSNVIIGE AMENESRIHI IDFQIAQGSQ WISLIQALSR 300 RAGGPPFIRI TGVDDSQSAH ARGGGLELVG QKLAQLAESC GVPFEFNGAA MSGCQVQLEH 360 LKVRHGEALA VNFPYILHHM PDESVSTANH RDRLLRLMKS LSPKIVTLVE QESNTNTSTF 420 AQRFCETLDY YTAMFESIDA GRPRDDRQRI SAEEHCVAKD VVNIIACEGI ERVERHELFG 480 KWRMRLEMAG FSQLRLSPSV SNSVRDMLKE YSSNYRIAEG GNGALYLGWK NRALATSSAW 540 R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 6e-57 | 167 | 540 | 25 | 377 | Protein SCARECROW |
5b3h_D | 6e-57 | 167 | 540 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095941.1 | 0.0 | scarecrow-like protein 13 | ||||
Swissprot | Q9M0M5 | 0.0 | SCL13_ARATH; Scarecrow-like protein 13 | ||||
TrEMBL | A0A4D9B536 | 0.0 | A0A4D9B536_SALSN; Uncharacterized protein | ||||
STRING | Migut.M01421.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17230.1 | 0.0 | SCARECROW-like 13 |