PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022108-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 541aa    MW: 59758.2 Da    PI: 5.3573
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022108-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS408.75.6e-1251615412374
                   GRAS   2 velLlecAeavssgdle..........laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                             +lL++cAe vs+ d+           +a+al+  l++ +s +g+p qRl ay++e+L+arl++s+s +yk+l+++e +   sse ++
  SMil_00022108-RA_Salv 161 NQLLVACAEIVSEADTIsmsdrqvaisAAEALMDILEKKVSVSGEPAQRLGAYMLEGLRARLLSSGSIIYKKLKCKEPT---SSEMMS 245
                            68999999999996653333344666689999999*******************************************9...99**** PP

                   GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerL 165
                            ++ ++++++P++kf+++  N  I ea+e+e+r+HiiDf+i qG QW++L+qaL+ R++gpp +RiTgv++++s   +   le +g++L
  SMil_00022108-RA_Salv 246 YMGVLYQICPYYKFAYMSSNVIIGEAMENESRIHIIDFQIAQGSQWISLIQALSRRAGGPPFIRITGVDDSQSAhaRGGGLELVGQKL 333
                            **********************************************************************9988889999******** PP

                   GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                            a++Ae++gvpfefn  +a +  +++le+L+v++gEalaVn+ + lh+++desvs++++rd++L+l+kslsPk+v++veqe+++n+++F
  SMil_00022108-RA_Salv 334 AQLAESCGVPFEFNG-AAMSGCQVQLEHLKVRHGEALAVNFPYILHHMPDESVSTANHRDRLLRLMKSLSPKIVTLVEQESNTNTSTF 420
                            ***************.8999******************************************************************** PP

                   GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                            ++rf+e+l+yy+a+f+s++a+ pr++++ri+ E++++++++vn++aceg er+erhe ++kWr+rle+aGF++++ls ++ ++++ +l
  SMil_00022108-RA_Salv 421 AQRFCETLDYYTAMFESIDAGRPRDDRQRISAEEHCVAKDVVNIIACEGIERVERHELFGKWRMRLEMAGFSQLRLSPSVSNSVRDML 508
                            **************************************************************************************** PP

                   GRAS 342 rkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                            ++++s+ yr+ e  +g+l+lgWk+r+L + SaWr
  SMil_00022108-RA_Salv 509 KEYSSN-YRIAEGgNGALYLGWKNRALATSSAWR 541
                            ****77.***988578888**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.142134521IPR005202Transcription factor GRAS
PfamPF035141.9E-122161541IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MQTSQTSASF QSFYNQPMQQ VDPYGSSTGS RSQGTEVSFQ TCPDQFFTLE STPATDYATY  60
SSPSAVSVSS SRSPFSPQGS QSYASDLYQP SDNTYGSPLS GSSGVDDENK LLHALWVLRN  120
ELLGPESDTD DSGTFNGVVT QPSPFTRYNK ILEMAPHMDL NQLLVACAEI VSEADTISMS  180
DRQVAISAAE ALMDILEKKV SVSGEPAQRL GAYMLEGLRA RLLSSGSIIY KKLKCKEPTS  240
SEMMSYMGVL YQICPYYKFA YMSSNVIIGE AMENESRIHI IDFQIAQGSQ WISLIQALSR  300
RAGGPPFIRI TGVDDSQSAH ARGGGLELVG QKLAQLAESC GVPFEFNGAA MSGCQVQLEH  360
LKVRHGEALA VNFPYILHHM PDESVSTANH RDRLLRLMKS LSPKIVTLVE QESNTNTSTF  420
AQRFCETLDY YTAMFESIDA GRPRDDRQRI SAEEHCVAKD VVNIIACEGI ERVERHELFG  480
KWRMRLEMAG FSQLRLSPSV SNSVRDMLKE YSSNYRIAEG GNGALYLGWK NRALATSSAW  540
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-5716754025377Protein SCARECROW
5b3h_D6e-5716754025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095941.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A4D9B5360.0A0A4D9B536_SALSN; Uncharacterized protein
STRINGMigut.M01421.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13