PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00022052-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

WRKY

Protein Properties

Length: 312aa MW: 34919.8 Da PI: 8.7731

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00022052-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.5	5.6e-33	196	253	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk++ers +d +vv++tYeg+Hnh+ SMil_00022052-RA_Salv 196 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCNVKKRIERSYQDATVVITTYEGQHNHH 253 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.1E-34	180	255	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-28	187	255	IPR003657	WRKY domain
PROSITE profile	PS50811	31.651	190	255	IPR003657	WRKY domain
SMART	SM00774	1.0E-37	195	254	IPR003657	WRKY domain
Pfam	PF03106	4.5E-25	196	253	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
LSKLLLASQY HYHYNNHNFC FLNPKILPQK LINPMSNDPN KINPYYPFFE FHHDHADHNH 60 TMLSEGFAFP IVTDHSNFSP FMYQNPNEFH HILQGYNTLS PPPDPPPLCN NTSNNSNDVA 120 GGSGGDGGGG ENIPVTPNSS ASISSQEAGA EEDSSKSKKD VRDGKSKNVK AKEKEGKKQR 180 QARFAFMTKS EVDNLEDGYR WRKYGQKAVK NSPFPRSYYR CTSQKCNVKK RIERSYQDAT 240 VVITTYEGQH NHHSPAVLRG SAAAMLAPSL FSPQPAFPTF PQDMFYPSSA TNFYTQLTDS 300 GRHVPPPPPP PA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	7e-25	182	255	1	74	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022849953.1	7e-71	probable WRKY transcription factor 28
TrEMBL	A0A2G9I787	1e-71	A0A2G9I787_9LAMI; Uncharacterized protein
STRING	Migut.M00487.1.p	2e-63	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	1e-44	WRKY DNA-binding protein 71