PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00021925-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 476aa MW: 53190.4 Da PI: 7.1302

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00021925-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.1	3.6e-36	64	206	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 lp+G++F+Ptd+el+ e+L++kvegk+ ++++ +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ SMil_00021925-RA_Salv 64 LPAGVKFDPTDQELI-EHLEAKVEGKDskshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQt 149 799**********.99****96665443333333666646******.555666799**************7333 PP NAM 80 .......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l SMil_00021925-RA_Salv 150 ecdlqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 206 4555544778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-38	60	225	IPR003441	NAC domain
PROSITE profile	PS51005	32.794	64	225	IPR003441	NAC domain
Pfam	PF02365	1.8E-16	65	206	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
LQNSGKIYLK KKKDFCAMNK NSQLGSVSSS DLIDAKLEEH QLCGSKQCPG CGHKLEGKPD 60 WVGLPAGVKF DPTDQELIEH LEAKVEGKDS KSHPLIDEFI PTIEGEDGIC YTHPEKLPGV 120 TRDGLSRHFF HRPSKAYTTG TRKRRKIQTE CDLQGGETRW HKTGKTRPVM VNGKQKGCKK 180 ILVLYTNFGK NRKPEKTNWV MHQYHLGQHE EEKEGELVVS KIFYQTQPRQ CNWTERGGAA 240 AAGDDIRRDS GSCSSSKEII PQRDDFSAAA AAVTMAAAAS VPTYTGIDIH HLKADHFGYL 300 PYRKSFDEAA GSIGEASIAR EAAAGTCEER DMGQHHVTHE RDIPQHHVTH EHHHQIAAAA 360 AAATAFHISR PSHSISTIIS PPPLHHTSII LDQDHPFHVP RIMLPNENYQ QHQQQQQQQQ 420 QHHKLGGRSA SGLEELIMGC TSTDIKEESS MANQQEAEWL KYSTFWPDPD NPDHHG

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

LQNSGKIYLK KKKDFCAMNK NSQLGSVSSS DLIDAKLEEH QLCGSKQCPG CGHKLEGKPD  60
WVGLPAGVKF DPTDQELIEH LEAKVEGKDS KSHPLIDEFI PTIEGEDGIC YTHPEKLPGV  120
TRDGLSRHFF HRPSKAYTTG TRKRRKIQTE CDLQGGETRW HKTGKTRPVM VNGKQKGCKK  180
ILVLYTNFGK NRKPEKTNWV MHQYHLGQHE EEKEGELVVS KIFYQTQPRQ CNWTERGGAA  240
AAGDDIRRDS GSCSSSKEII PQRDDFSAAA AAVTMAAAAS VPTYTGIDIH HLKADHFGYL  300
PYRKSFDEAA GSIGEASIAR EAAAGTCEER DMGQHHVTHE RDIPQHHVTH EHHHQIAAAA  360
AAATAFHISR PSHSISTIIS PPPLHHTSII LDQDHPFHVP RIMLPNENYQ QHQQQQQQQQ  420
QHHKLGGRSA SGLEELIMGC TSTDIKEESS MANQQEAEWL KYSTFWPDPD NPDHHG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020549346.1	0.0	uncharacterized protein LOC105162027 isoform X2
Swissprot	Q9M0F8	0.0	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2G9HLT5	0.0	A0A2G9HLT5_9LAMI; Uncharacterized protein
STRING	Migut.K00558.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4057	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-144	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]