PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00021800-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | Nin-like | ||||||||
Protein Properties | Length: 229aa MW: 26673.3 Da PI: 6.3139 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 84.4 | 1e-26 | 118 | 167 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++le+++kyF+ pi+ AAkeL+v+lTvLK++CR+++I+RWPhRkiksl SMil_00021800-RA_Salv 118 SALQLEEIQKYFDFPITRAAKELNVGLTVLKKRCRELNIARWPHRKIKSL 167 6799********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.382 | 104 | 188 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 8.2E-23 | 120 | 167 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MASTGIKLEN QNEVGCFFLE EPIPPLGCWE QQFACVEGFN LGLHGLLEYE QFPLAHQSSN 60 VELNDFEDFS GDLWVFDDHP SFHNDPNNNI ANPDNITEQE ESLTPNDVVR RNGRHKSSAL 120 QLEEIQKYFD FPITRAAKEL NVGLTVLKKR CRELNIARWP HRKIKSLKSL IHNVKELGLT 180 NEIEMLEEHK KMVERIPEME LTERTKKLRQ ACFKANYKKR RSLQQIVFP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858066.1 | 1e-81 | PREDICTED: protein RKD4 | ||||
TrEMBL | A0A2G9HV85 | 2e-98 | A0A2G9HV85_9LAMI; Uncharacterized protein | ||||
STRING | EOY23580 | 5e-64 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12143 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 6e-45 | RWP-RK domain-containing protein |