PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00021779-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 226aa    MW: 25717.2 Da    PI: 7.9075
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00021779-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-174895148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT eEd++l ++++ +G g W++ ar  g++Rt+k+c++rw++yl
  SMil_00021779-RA_Salv 48 KGPWTMEEDLILMNYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 95
                           79********************************************97 PP
2Myb_DNA-binding55.41.4e-17101144146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  SMil_00021779-RA_Salv 101 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 144
                            7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-224398IPR009057Homeodomain-like
PROSITE profilePS5129415.4454395IPR017930Myb domain
SuperFamilySSF466892.4E-3046142IPR009057Homeodomain-like
SMARTSM007171.5E-114797IPR001005SANT/Myb domain
PfamPF002491.2E-154895IPR001005SANT/Myb domain
CDDcd001673.93E-95095No hitNo description
PROSITE profilePS5129425.85996150IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-2599150IPR009057Homeodomain-like
SMARTSM007171.8E-15100148IPR001005SANT/Myb domain
PfamPF002491.9E-16101144IPR001005SANT/Myb domain
CDDcd001672.75E-12105144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
LSTTSIIFLQ ISTIRIPPPL PLCLLLSLSL SKDMDKKPCK SIDVEVRKGP WTMEEDLILM  60
NYIANHGEGV WNSLARSAGL KRTGKSCRLR WLNYLRPDVR RGNITPEEQL LIMELHAKWG  120
NRWSKIAKHL PGRTDNEIKN YWRTRIQKHI KQAENCTGQT AENSNDQAST SQVSSSCPAD  180
HTVESYSPPS FTGNNMEPFH GPFPTESNEN LWSMEDLWSL QLLNGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-254015019128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594170.0KF059417.1 Salvia miltiorrhiza MYB-related transcription factor (MYB63) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073189.11e-121myb-related protein 305-like
SwissprotP813911e-107MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A075BMS11e-143A0A075BMS1_SALMI; MYB-related transcription factor
STRINGMigut.H00102.1.p1e-117(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-88myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]