PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00021741-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 346aa    MW: 38028.5 Da    PI: 10.0512
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00021741-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.6e-12555146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                           +++WT+eE+  l+ +v ++G+g W+tI +  +       R+  ++k++w++
  SMil_00021741-RA_Salv  5 KQKWTPEEEAALKAGVLKHGPGKWRTILKDPQfsgvlYLRSNVDLKDKWRN 55
                           79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.658158IPR017930Myb domain
SuperFamilySSF466891.79E-15268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-14456IPR009057Homeodomain-like
SMARTSM007174.9E-7459IPR001005SANT/Myb domain
PfamPF002494.2E-9555IPR001005SANT/Myb domain
CDDcd116603.12E-18656No hitNo description
PROSITE profilePS5150423.081115188IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.17E-17117197IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.3E-11118183IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.106.0E-15120189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.2E-8125182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGAPKQKWTP EEEAALKAGV LKHGPGKWRT ILKDPQFSGV LYLRSNVDLK DKWRNMSVMA  60
NGWGSRERAR LALKRMHPAP KHGESSMALS TFSQSDDELV DARSLDPSGG SSPNDGPKRS  120
IMRLDNLIME AISNLREPGG SNKTSIAAYI EDQYWAPPNF KRILSAKLKH MAATGKLIKM  180
KRKYKIAGAS TLSERRRNPS VAVEGRQKIS PKIGHDDIGH LTKSQIDVEL AKMRSMTPQE  240
AAAAAAQAVA EAEAAMAEAE EAAREAEAAE ADAEAAQAFA EAALKTLKGR NTPNMSLTLT  300
PPSDDEEELS FCATCVWKMV ERCLLGKKEE SNRKRKRKKK DPVEIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331338NRKRKRKK
2332337RKRKRK
3332339RKRKRKKK
4332340RKRKRKKKD
5333339KRKRKKK
6334338RKRKK
7334340RKRKKKD
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088080.11e-163telomere repeat-binding factor 1 isoform X1
RefseqXP_020552115.11e-163telomere repeat-binding factor 1 isoform X1
SwissprotQ8VWK41e-102TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A4D9BGI61e-170A0A4D9BGI6_SALSN; Myb proto-oncogene protein, plant
STRINGMigut.B00451.1.p1e-144(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-101telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]