PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00021571-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 196aa    MW: 22108.1 Da    PI: 9.2769
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00021571-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.9e-081460347
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                            WT+eE + +  a ++l  +   +W ++a++++  ++  ++++ ++k+
  SMil_00021571-RA_Salv 14 TWTKEENKTFESALAMLDEEspeRWLKVAAMIP-SKSVSDVINQYRKL 60
                           7*****************99*************.************97 PP
2Myb_DNA-binding452.4e-1494139247
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++WT+ E+ +++ + +++G+g+Wk I+r++  ++t+ q+ s+ qky
  SMil_00021571-RA_Salv  94 LPWTQAEHRRFLLGLEKHGKGDWKNISRKFVVTKTPTQVASHAQKY 139
                            69*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.0421065IPR017884SANT domain
SMARTSM007174.2E-71163IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-101366IPR009057Homeodomain-like
PfamPF002494.3E-71460IPR001005SANT/Myb domain
CDDcd001671.61E-61460No hitNo description
Gene3DG3DSA:1.10.10.605.9E-1086146IPR009057Homeodomain-like
PROSITE profilePS5129418.35488144IPR017930Myb domain
SMARTSM007172.8E-1092142IPR001005SANT/Myb domain
SuperFamilySSF466893.23E-1592143IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-1693143IPR006447Myb domain, plants
PfamPF002492.6E-1195139IPR001005SANT/Myb domain
CDDcd001671.66E-995139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
METLSGRLME GSSTWTKEEN KTFESALAML DEESPERWLK VAAMIPSKSV SDVINQYRKL  60
AADVSDIEAG LVPIPTYLSS SFSLQSPSQR IKGLPWTQAE HRRFLLGLEK HGKGDWKNIS  120
RKFVVTKTPT QVASHAQKYY MRQLNGGGKD KHRRPSIHDI TVHLARSEPP FLHGDVTLFN  180
SDLSVAYPYP ESCIYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1415941190RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076737.11e-76transcription factor DIVARICATA-like
RefseqXP_011076738.11e-76transcription factor DIVARICATA-like
SwissprotQ8S9H72e-58DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A4D9A5813e-84A0A4D9A581_SALSN; Uncharacterized protein
STRINGMigut.F00707.1.p3e-72(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.11e-63MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]