PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00021494-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 160aa    MW: 17921.3 Da    PI: 5.9216
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00021494-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.4e-17858155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +++ G+r +k +g+Wv+eIr+p   gk+ rf+lg++  +e+Aa+a++aa   l+g
  SMil_00021494-RA_Salv  8 PHFIGIRKRK-WGKWVSEIREP---GKKSRFWLGSYEKPEMAAAAYDAASFHLKG 58
                           5789***999.**********8...557*********************988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.11E-18868No hitNo description
PfamPF008473.6E-11858IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-28967IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-20967IPR016177DNA-binding domain
PROSITE profilePS5103220.231966IPR001471AP2/ERF domain
SMARTSM003801.5E-29972IPR001471AP2/ERF domain
PRINTSPR003679.2E-101021IPR001471AP2/ERF domain
PRINTSPR003679.2E-104868IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEDSCSTPHF IGIRKRKWGK WVSEIREPGK KSRFWLGSYE KPEMAAAAYD AASFHLKGPT  60
ARLNFPHLAG LLPKPASNNA ADVQAAAQEA AMQINVGTPA AEVPPRVGLS ATQIEAINEM  120
PLDSPKMWMH GIEESLMLGQ DFVTELNHHD QWDYYYPIWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-15966260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-15966563ATERF1
3gcc_A6e-15966563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453102.15e-53ethylene-responsive transcription factor ERF022
RefseqXP_024454096.16e-53ethylene-responsive transcription factor ERF022-like
SwissprotQ9C9I24e-42ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A2K2B1Y71e-51A0A2K2B1Y7_POPTR; Uncharacterized protein
TrEMBLB9GX151e-51B9GX15_POPTR; Uncharacterized protein
STRINGPOPTR_0003s05300.12e-52(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.16e-37ERF family protein