PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00021464-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 226aa    MW: 25691.8 Da    PI: 7.048
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00021464-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-16107149145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            ++ WT+eEd +l++a+++ G++ W+  a+++  gRt++++k++w+
  SMil_00021464-RA_Salv 107 KDVWTEEEDRILIEAHAEIGNK-WAEMAKRLA-GRTENSIKNHWN 149
                            578*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-44676IPR009057Homeodomain-like
PROSITE profilePS500905.5414777IPR017877Myb-like domain
PROSITE profilePS5129421.775102156IPR017930Myb domain
SuperFamilySSF466891.1E-15105159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-19105156IPR009057Homeodomain-like
SMARTSM007171.5E-15106154IPR001005SANT/Myb domain
PfamPF002495.5E-15107149IPR001005SANT/Myb domain
CDDcd001671.55E-12110152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGCAAMQGFH GGGFLNFDDT DFHKENGVKR DKYGANDTAS ASAKTPKAKS GKGQWTPEED  60
RLINNYVDPF GGEIWREKVV TNRASGEGED RKAMRYKLIF QTNLLQKDVW TEEEDRILIE  120
AHAEIGNKWA EMAKRLAGRT ENSIKNHWNA TKRRQLSRRK CRPTSLLQNY IKSLSLEKGS  180
RSLRNTTAPD IEMDDFSFMD DFGSAPPPCF EMDLHGLKED FDFAMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-20521564105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-195215658159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-195215658159MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-195115626128MYB TRANSFORMING PROTEIN
1mse_C7e-20521564105C-Myb DNA-Binding Domain
1msf_C7e-20521564105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0595290.0KF059529.1 Salvia miltiorrhiza MYB-related transcription factor (MYB65) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567636.11e-48PREDICTED: transcription factor MYB98-like
SwissprotQ9S7L25e-36MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A059PRU11e-124A0A059PRU1_SALMI; MYB-related transcription factor
STRINGPGSC0003DMT4000873247e-46(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-35myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]