PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00021464-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB_related

Protein Properties

Length: 226aa MW: 25691.8 Da PI: 7.048

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00021464-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	107	149	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+eEd +l++a+++ G++ W+ a+++ gRt++++k++w+ SMil_00021464-RA_Salv 107 KDVWTEEEDRILIEAHAEIGNK-WAEMAKRLA-GRTENSIKNHWN 149 578*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-4	46	76	IPR009057	Homeodomain-like
PROSITE profile	PS50090	5.541	47	77	IPR017877	Myb-like domain
PROSITE profile	PS51294	21.775	102	156	IPR017930	Myb domain
SuperFamily	SSF46689	1.1E-15	105	159	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.7E-19	105	156	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-15	106	154	IPR001005	SANT/Myb domain
Pfam	PF00249	5.5E-15	107	149	IPR001005	SANT/Myb domain
CDD	cd00167	1.55E-12	110	152	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MGCAAMQGFH GGGFLNFDDT DFHKENGVKR DKYGANDTAS ASAKTPKAKS GKGQWTPEED 60 RLINNYVDPF GGEIWREKVV TNRASGEGED RKAMRYKLIF QTNLLQKDVW TEEEDRILIE 120 AHAEIGNKWA EMAKRLAGRT ENSIKNHWNA TKRRQLSRRK CRPTSLLQNY IKSLSLEKGS 180 RSLRNTTAPD IEMDDFSFMD DFGSAPPPCF EMDLHGLKED FDFAMG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	8e-20	52	156	4	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	3e-19	52	156	58	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-19	52	156	58	159	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	1e-19	51	156	26	128	MYB TRANSFORMING PROTEIN
1mse_C	7e-20	52	156	4	105	C-Myb DNA-Binding Domain
1msf_C	7e-20	52	156	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269\|PubMed:16214903, ECO:0000269\|PubMed:17693534, ECO:0000269\|PubMed:17937500, ECO:0000269\|PubMed:18410484, ECO:0000269\|PubMed:23093426}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF059529	0.0	KF059529.1 Salvia miltiorrhiza MYB-related transcription factor (MYB65) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016567636.1	1e-48	PREDICTED: transcription factor MYB98-like
Swissprot	Q9S7L2	5e-36	MYB98_ARATH; Transcription factor MYB98
TrEMBL	A0A059PRU1	1e-124	A0A059PRU1_SALMI; MYB-related transcription factor
STRING	PGSC0003DMT400087324	7e-46	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3150	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-35	myb domain protein 98

Publications ? help Back to Top
Mendes MA, et al. Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis. Development, 2016. 143(15): p. 2780-90 [PMID:27338615]