PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00021275-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | Dof | ||||||||
Protein Properties | Length: 191aa MW: 21530.1 Da PI: 9.5052 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.2 | 1.5e-37 | 58 | 116 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +ek+++cprC s++tkfCy+nny+++qPr+fCk+C+ryWt GG++rnv vG+grrk k+ SMil_00021275-RA_Salv 58 PEKIIPCPRCSSMDTKFCYFNNYNVNQPRHFCKQCQRYWTSGGTMRNVAVGSGRRKTKT 116 78999***************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 6.3E-31 | 60 | 116 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.233 | 62 | 116 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 64 | 100 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-23 | 64 | 115 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MSAIKLFGKT ISPDHLFSDA SLSQQRHSSF ASSTSLDSKD ESSDYESSNG SEEKAKKPEK 60 IIPCPRCSSM DTKFCYFNNY NVNQPRHFCK QCQRYWTSGG TMRNVAVGSG RRKTKTALDH 120 TDFLFSFYCA SPPSLLGKHS RDEWRINNVS DAVGMFRESK APARIPLDDR ALLLRANPAA 180 FSRSLNFHER A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation. Not involved in direct flowering time regulation. {ECO:0000269|PubMed:19619493}. | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By red or far-red light. Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269|PubMed:19619493}. | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC021893 | 9e-33 | AC021893.18 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence. | |||
GenBank | AK068588 | 9e-33 | AK068588.1 Oryza sativa Japonica Group cDNA clone:J013152P10, full insert sequence. | |||
GenBank | AP014966 | 9e-33 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 9e-33 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012460726.1 | 5e-43 | PREDICTED: cyclic dof factor 1-like | ||||
Swissprot | P68350 | 3e-37 | DOF15_ARATH; Dof zinc finger protein DOF1.5 | ||||
Swissprot | Q93ZL5 | 1e-35 | CDF2_ARATH; Cyclic dof factor 2 | ||||
TrEMBL | A0A4D8ZGF8 | 1e-65 | A0A4D8ZGF8_SALSN; Dof zinc finger protein DOF5.5 | ||||
STRING | Gorai.012G186900.1 | 2e-42 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 3e-31 | cycling DOF factor 2 |
Publications ? help Back to Top | |||
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