PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00021123-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 22343.9 Da PI: 10.4981 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.7 | 2.1e-21 | 77 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 sgy+GVr ++ +grW AeIrd r r++lg+f+taeeAa+a++aa+++++g SMil_00021123-RA_Salv 77 SGYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRMKG 127 89********.**********32....25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 26 | No hit | No description |
SuperFamily | SSF54171 | 6.54E-22 | 77 | 136 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.1E-15 | 77 | 127 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.05E-15 | 77 | 136 | No hit | No description |
PROSITE profile | PS51032 | 22.339 | 78 | 135 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-31 | 78 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-11 | 79 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-29 | 79 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-11 | 101 | 117 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MNKNSNFDLS ENGHELLHFH PSSSSCNRSP NRVEIDYAEI DRRSPPVLEG IAAVVGERVL 60 FGDKVERESG SNRRKTSGYR GVRKRPWGRW SAEIRDRIGR CRHWLGTFDT AEEAARAYDA 120 AARRMKGSGA RTNFQIPPIL PSPSSSCSDQ PRRRIRAKTR GKCSVVTCAA HLFSPNFAAD 180 ATNDVGLELQ DGGFGNKNRV S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-17 | 79 | 134 | 15 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 6e-34 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017978247.1 | 7e-47 | PREDICTED: ethylene-responsive transcription factor ERF084 | ||||
Swissprot | Q9M8M5 | 4e-32 | ERF84_ARATH; Ethylene-responsive transcription factor ERF084 | ||||
TrEMBL | A0A4D9AD22 | 2e-72 | A0A4D9AD22_SALSN; EREBP-like factor | ||||
STRING | EOY25976 | 3e-46 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11552 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 1e-28 | ERF family protein |