PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00021102-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | LBD | ||||||||
Protein Properties | Length: 153aa MW: 17098.2 Da PI: 4.1853 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 73.1 | 5.4e-23 | 10 | 77 | 31 | 98 |
DUF260 31 anvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 a vhk+FGasnv+kll++lpe+ r+da+ ++ yeA ar++dP+yG++++i++lqqq+++l++e+++ + SMil_00021102-RA_Salv 10 ASVHKVFGASNVSKLLSHLPEHSRSDAAITISYEALARMEDPIYGCIAHIFALQQQVASLEEEIQMYG 77 679************************************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.159 | 1 | 80 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.6E-21 | 10 | 75 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MTGVSSSCGA SVHKVFGASN VSKLLSHLPE HSRSDAAITI SYEALARMED PIYGCIAHIF 60 ALQQQVASLE EEIQMYGKAM ANLGINGESS NGYFSREWEN EAIMQTMMDP GTSDEIFEAY 120 LLERLLEQDY YLCQDNNLES LWTKYAAPPL SQW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-20 | 10 | 73 | 41 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-20 | 10 | 73 | 41 | 104 | LOB family transfactor Ramosa2.1 |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858285.1 | 9e-42 | PREDICTED: LOB domain-containing protein 33 | ||||
Swissprot | Q9LHS8 | 2e-32 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A4D8ZBM4 | 1e-82 | A0A4D8ZBM4_SALSN; Uncharacterized protein | ||||
STRING | Migut.F00757.1.p | 4e-41 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12769 | 15 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 8e-35 | LOB domain-containing protein 33 |
Publications ? help Back to Top | |||
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