PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00020986-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 185aa MW: 21049.9 Da PI: 8.6349

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00020986-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.3	8.7e-12	72	110	51	89
FAR1 51 errtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +r++ra+tr gCka+++++ke++g w ++kle++H+H+l SMil_00020986-RA_Salv 72 RRKPRAVTREGCKAMVMIRKEDSGAWIIAKLETQHSHPL 110 7999*********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.7E-10	71	110	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MSDGGEMVNF YDEKDFSSQE LCLNVEAPRV GMEFESEESA MAYYDAYAKR VGFIIRIGNC 60 HRSSLNGSVI SRRKPRAVTR EGCKAMVMIR KEDSGAWIIA KLETQHSHPL GVSPGKPRRG 120 PLRSQSQDEK DKRIRELSTE LHRTKQKLAE CQKQLSAILS DVELHVDHLA RSVQHLVQNV 180 KEIER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089602.1	5e-82	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_011089604.1	2e-82	protein FAR1-RELATED SEQUENCE 5-like isoform X3
TrEMBL	A0A2R6QJP0	1e-79	A0A2R6QJP0_ACTCH; Protein FAR1-RELATED SEQUENCE like (Fragment)
STRING	Aquca_058_00091.1	6e-70	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12791	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-46	FAR1 family protein