PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00020944-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 412aa MW: 45838.3 Da PI: 5.1853

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00020944-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.3e-06	224	252	3	31
HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 3 rahnerErrRRdriNsafeeLrellPkas 31 ++h + E+ RR +N++++ Lr l+ +++ SMil_00020944-RA_Salv 224 AKHFATEKHRRVLLNDKYQALRALVATPT 252 68***********************9983 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.537	221	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-5	224	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.42E-7	224	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.34E-4	225	271	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MYQENGGFDE SGITHQAEDA FSQTQLPNCN TFSMEEQSYP QNDVAAAVAA ASALEMELQH 60 QLEMEQCYTN KSAAEMGNES SNWQEMAGSF NHQNPAADFN QFYGATASMG EAPDLLNIFP 120 LPRCSPSSLL PNFSQKFPAF LASLGLLGDV NDGVVYDPLL PLNLPPQPPL LRELFHSLPH 180 GHGYSGLFTD ERDANGGLYQ NGDRLYEFNA AEMGAKNRDG IKDAKHFATE KHRRVLLNDK 240 YQALRALVAT PTKNXVQDAI VYIEELKRTV SELKGLVEKK RCARERLKRP KMEENGSVES 300 KCVAENGSSL RSSWLHRKSK NTEVDVRIID DEITVKLVQQ KRINCLLFVS KVLDDLQLDL 360 HHVAGGLIGD YYTYLFNSKI CEGSIVYASA VANKLIEVVD KQYAAVPPTS SY

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MYQENGGFDE SGITHQAEDA FSQTQLPNCN TFSMEEQSYP QNDVAAAVAA ASALEMELQH  60
QLEMEQCYTN KSAAEMGNES SNWQEMAGSF NHQNPAADFN QFYGATASMG EAPDLLNIFP  120
LPRCSPSSLL PNFSQKFPAF LASLGLLGDV NDGVVYDPLL PLNLPPQPPL LRELFHSLPH  180
GHGYSGLFTD ERDANGGLYQ NGDRLYEFNA AEMGAKNRDG IKDAKHFATE KHRRVLLNDK  240
YQALRALVAT PTKNXVQDAI VYIEELKRTV SELKGLVEKK RCARERLKRP KMEENGSVES  300
KCVAENGSSL RSSWLHRKSK NTEVDVRIID DEITVKLVQQ KRINCLLFVS KVLDDLQLDL  360
HHVAGGLIGD YYTYLFNSKI CEGSIVYASA VANKLIEVVD KQYAAVPPTS SY

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257451	5e-95	KP257451.1 Salvia miltiorrhiza clone 18 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093423.1	1e-169	transcription factor bHLH91-like
TrEMBL	A0A4D8Y3U3	0.0	A0A4D8Y3U3_SALSN; Uncharacterized protein
STRING	Migut.N01685.1.p	1e-131	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2696	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	1e-59	bHLH family protein