PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020895-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 488aa    MW: 54875.5 Da    PI: 8.0003
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020895-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.99e-19135224198
                            EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                            f+k l++s+v +  ++ lp +f++ h      ++++++lede+g+++ +k+i +k++    l++GW++Fv  n+L egD+++F+l+g 
  SMil_00020895-RA_Salv 135 FLKSLVRSHVASCFWMGLPGPFCKIHlP---GNDTEVILEDENGEKFPIKYIANKTG----LSAGWRKFVAGNKLVEGDVLIFQLIGP 215
                            89*********************77753...34679***************777776....*************************98 PP

                            SEE..EEEEE- CS
                     B3  88 sefelvvkvfr 98 
                             +f  +v  +r
  SMil_00020895-RA_Salv 216 CKF--KVYTIR 224
                            888..666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-20128226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-23128226IPR015300DNA-binding pseudobarrel domain
CDDcd100173.07E-24133224No hitNo description
PROSITE profilePS5086312.901135226IPR003340B3 DNA binding domain
SMARTSM010193.4E-21135226IPR003340B3 DNA binding domain
PfamPF023621.4E-16135225IPR003340B3 DNA binding domain
PfamPF052661.8E-8361475IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
LERMKLKIVH QNQESRGGGE EQAMKTEDAE EPAKDSFSPR EPSPVSASHP LLVSGKRKRK  60
PKELIDEVSS IIVRRRRKSF SSSKSQDDVP DSGGRSRSKG DAKGGGPGST AQIKSPTMIR  120
AEEFMLSLSN DQPSFLKSLV RSHVASCFWM GLPGPFCKIH LPGNDTEVIL EDENGEKFPI  180
KYIANKTGLS AGWRKFVAGN KLVEGDVLIF QLIGPCKFKV YTIRANDLTE VDGALSLLIL  240
DSQTKQNDAE GTVDAQSTKK RRRKSLPMTV VQKKKQKAGL LEEQSGNDSD EVASEVLEGA  300
KLSGSFHFKD VNKFDEFHIV VNGVCIDSDL PEDIRRKYYE LCCSKNSFLH DRLLPGLYSK  360
LAAGMIVETI NIADSIRGCK PTTPRKDFEV WEKSLRSFEL LGLNVGFIRS RLHQLQRLAF  420
ETEDALEIRR YLEVQKEQSR ANDEIQKLEA KLVELREISA KCDDELENLR IKKESYELKF  480
QVEVDAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15777KRKPKELIDEVSSIIVRRRRK
2258263KKRRRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1825591e-43AC182559.2 Erythranthe guttata clone MGBa-22D19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099150.10.0B3 domain-containing protein Os01g0234100
TrEMBLA0A4D8ZQS10.0A0A4D8ZQS1_SALSN; Uncharacterized protein
STRINGMigut.H00442.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-31B3 family protein