PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00020892-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bZIP

Protein Properties

Length: 311aa MW: 35200.7 Da PI: 10.9707

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00020892-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.4	8.5e-10	108	156	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + SMil_00020892-RA_Salv 108 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQ 156 9****************************************99887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.6E-16	104	168	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.714	106	169	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-8	108	156	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-11	108	159	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.8E-9	108	162	No hit	No description
CDD	cd14703	3.64E-21	109	158	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
LRCSISPSPR VSRTPLLALP FVAFYRFLVL EPRRYARLRG CRRARPIRAF RALRRVDIFI 60 DKTAASRPRH RHSNSVDSSS FLFNDNSIEA KKAMPPDKLA ELWTIDPKRA KRILANRQSA 120 ARSKERKARY ISELERKVQT LQTEATTLSA QLTLFQRDTT GLSNENTELK LRLQAMEQQA 180 QLRDALNEAL RQEVERLRVA TGEMSTTSDT FNLTMQHLPY NQTTFFSNHN QPQAGSNESL 240 NVQMQQFHTL QASMSSHQQH PVLSANHAQG LSDSMHQDPL GRFQGLDISN GGTHVKSEGP 300 SISASESSST F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076587.1	1e-138	transcription factor RF2b
Swissprot	Q6S4P4	1e-88	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A4D9C510	1e-150	A0A4D9C510_SALSN; Uncharacterized protein
STRING	Migut.F00604.1.p	1e-116	(Erythranthe guttata)
STRING	Migut.F01247.1.p	1e-116	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-85	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]