PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020883-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 800aa    MW: 86788.7 Da    PI: 6.0046
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020883-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.5e-21121176156
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  SMil_00020883-RA_Salv 121 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 176
                            688999***********************************************999 PP
2START204.54.4e-643115381206
                            HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                  START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                            ela++a++elvk+a+++ep+Wv+      e++n++e+l+  ++  +     + +ea+r+sg+v+ ++  lve+l+d++ +W e+++  
  SMil_00020883-RA_Salv 311 ELALSAMDELVKMAQSDEPLWVRGLdggrEILNQEEYLRASSPCIGmkpngFVTEASRESGMVIINSLALVETLMDSN-KWAEMFPcl 397
                            57899************************************99888999999**************************.********* PP

                            ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEE CS
                  START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgil 153
                              + +t++vissg      galqlm+a+lq+lsplvp R++ f+R+++q+ +g+w++vdvSvd  ++       + +  +++lpSg+l
  SMil_00020883-RA_Salv 398 iaRTSTTDVISSGmggtrnGALQLMNAALQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDTIREAAHgggGAAFPNCRRLPSGCL 485
                            ***************************************************************999988778899999********** PP

                            EEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                  START 154 iepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                            +++++ng+skvtwveh++++++++h+l+r+lv+sg+ +ga++wvatlqrqce+
  SMil_00020883-RA_Salv 486 VQDMPNGYSKVTWVEHIEYDESVVHQLYRPLVGSGMGFGAQRWVATLQRQCEC 538
                            ***************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-21103178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-21108178IPR009057Homeodomain-like
PROSITE profilePS5007117.248118178IPR001356Homeobox domain
SMARTSM003892.2E-17119182IPR001356Homeobox domain
CDDcd000861.78E-18120178No hitNo description
PfamPF000461.9E-18121176IPR001356Homeobox domain
PROSITE patternPS000270153176IPR017970Homeobox, conserved site
SuperFamilySSF559614.15E-33302538No hitNo description
PROSITE profilePS5084843.373302541IPR002913START domain
CDDcd088756.21E-121306537No hitNo description
SMARTSM002346.6E-51311538IPR002913START domain
PfamPF018527.5E-56311538IPR002913START domain
SuperFamilySSF559611.04E-24566793No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MNFGDFLDNN SCSGGGGARI DIPFTNSITN NTMPAGAISQ PRFLSQSLSS KPMFTSPGLS  60
LALQTSMEGQ GEMARMVENN EISNVGGRRS RDEEHESRSG SGDMDGASGD DQDAADKPPR  120
KKRYHRHTPQ QIQELESLFK ECPHPDEKQR LELSKRLCLE TRQVKFWFQN RRTQMKTQLE  180
RHENSILRQE NDKLRAENMS IREAMRNPIC TNCGGPAVIG EISLEEQHIR IENARLKDEL  240
DRVCALAGKF LGRPIPSMGM PNSSLELGVG GGNGFPALIP SDFSVGMASP LPKAAAGTMS  300
VNPMERSMYL ELALSAMDEL VKMAQSDEPL WVRGLDGGRE ILNQEEYLRA SSPCIGMKPN  360
GFVTEASRES GMVIINSLAL VETLMDSNKW AEMFPCLIAR TSTTDVISSG MGGTRNGALQ  420
LMNAALQVLS PLVPVREVNF LRFCKQHAEG VWAVVDVSVD TIREAAHGGG GAAFPNCRRL  480
PSGCLVQDMP NGYSKVTWVE HIEYDESVVH QLYRPLVGSG MGFGAQRWVA TLQRQCECLA  540
ILMSSTVPPR DHSAAITAGG RRSMLKLAQR MTNNFCAGVC ASSVHKWNKL RTENVDEDVQ  600
VMTRKSIDDP GEPPGIVLSA ATSVWLPVSP QRLFDFLRDE RLRSEWDILS NGGPMQEMAH  660
IAKGQDHGNC VSLLRASAVN SNQSSMLILQ ETCIDSAGSL VVYAPVDIPA MHVVMNGGDS  720
AYVALLPSGF AIVPDGPGSS GSDGNGGAGQ RVGGSLLTVA FQILVNSLPT AKLTVESVET  780
VNNLISCTVQ KIKAALHCES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093167.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A4D8ZU170.0A0A4D8ZU17_SALSN; Homeobox-leucine zipper protein
STRINGVIT_15s0048g02000.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]