PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00020853-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | NF-X1 | ||||||||
Protein Properties | Length: 885aa MW: 98363.2 Da PI: 8.3237 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 17.2 | 1.1e-05 | 233 | 257 | 1 | 19 |
zf-NF-X1 1 CG......kHkCqklCHeGpCppCp 19 CG H+C+++CH G C+pC+ SMil_00020853-RA_Salv 233 CGrlleceAHRCGEICHDGLCQPCR 257 666666667***************8 PP | |||||||
2 | zf-NF-X1 | 18 | 6.2e-06 | 399 | 418 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ C+ G+CppC++ SMil_00020853-RA_Salv 399 CGRHACKRRCCDGDCPPCSE 418 ******************85 PP | |||||||
3 | zf-NF-X1 | 17.8 | 7.4e-06 | 428 | 445 | 3 | 20 |
zf-NF-X1 3 kHkCqklCHeGpCppCpq 20 +HkC ++CH+G C pCp+ SMil_00020853-RA_Salv 428 NHKCPAPCHRGACAPCPL 445 7***************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 3.23E-6 | 76 | 148 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 77 | 141 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd06008 | 3.46E-5 | 175 | 223 | No hit | No description |
Pfam | PF01422 | 0.0021 | 187 | 204 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0066 | 187 | 205 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.48E-6 | 229 | 277 | No hit | No description |
Pfam | PF01422 | 0.015 | 233 | 257 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.034 | 239 | 258 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.88E-7 | 282 | 325 | No hit | No description |
Pfam | PF01422 | 0.0084 | 292 | 310 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0021 | 292 | 311 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.28E-8 | 336 | 385 | No hit | No description |
Pfam | PF01422 | 0.074 | 346 | 365 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 25 | 346 | 374 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.25E-8 | 389 | 437 | No hit | No description |
Pfam | PF01422 | 8.6E-4 | 399 | 417 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0092 | 399 | 418 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.21E-10 | 416 | 464 | No hit | No description |
Pfam | PF01422 | 0.0087 | 426 | 444 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0041 | 426 | 445 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 25 | 483 | 504 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.1 | 494 | 503 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 83 | 512 | 521 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 54 | 512 | 557 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.19 | 594 | 605 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 1.9 | 594 | 619 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.37 | 632 | 650 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.64 | 634 | 649 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 9.8 | 695 | 716 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.6 | 697 | 714 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000037 | Biological Process | regulation of stomatal complex patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 885 aa Download sequence Send to blast |
MLSSATQPPQ LSSDSDSDSD TSSLSHSHQR HPDLSSSIFQ SYLSHSNSRN TGDDLHHQDL 60 IKIQSFLTSS RAGGLSCLIC LERIKPTDPT WSCSARCFAI FHLLCIQSWA HQSTTLAASR 120 ASARAAVAPD ENSFVWPCPK CRVEYPKRQT PKNYYCFCGK VEDPPRDPWV LPHSCGEVCG 180 RSLKYDCGHF CLLLCHPGPC PACPKLVKNK CFCGKLEDVR RCGLKYFSCK GVCGRLLECE 240 AHRCGEICHD GLCQPCRAKG TYRCLCGKEE MARECYEREF RCNGDCKKML SCGRHVCEKG 300 CHEGECGDCP FQGRRTCPCG KRVYEGMACD VSLPLCGATC NKLLSCGFHR CPERCHHGPC 360 VENCRMIVTK PCRCGSFKKQ VPCYQELTCE RKCQKLRDCG RHACKRRCCD GDCPPCSEMC 420 DRKLRCRNHK CPAPCHRGAC APCPLMVRIS CSCGNTHFEV PCGTETEQKP PKCPKPCPVA 480 PLCRHAPKCK VVWCHYGACP PCRLTCGERY SCGHECQLRC HGPIPPPRPE FTLKPKKKKG 540 NYVSEATPGS PCPPCPEVVL RSCFGHHIGA ERMMVCSNSA EFPCDNLCGN PLPCGNHYCT 600 YVCHPMKDHS SKIGESCEVC NLPCHKDRDP ECPHPCPMRC HPGECPPCKA LIRRSCHCGS 660 MVHVFECKYF NCLSEKEQMA VRSCKGPCHR KLPNCTHLCP ETCHPGPCPL PEKCSKKVTV 720 RCGCQTLKKE WLCQDVQAAH ISGGCDPKEI PKNQFGVGLI PCGSDCKSKV KAPDSELHLR 780 QVKPSEAKES DKANTVSKRR RRRQRVHEEE SASRLQKIVG VARRILVLLI VAVAVVVSAY 840 FGEARAVLQR APPRWRARGL EAGANLRAGL VGEEGQHCAY TRPFF |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 797 | 802 | KRRRRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076693.1 | 0.0 | NF-X1-type zinc finger protein NFXL2 | ||||
Swissprot | Q9FFK8 | 0.0 | NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2 | ||||
TrEMBL | A0A2G9GDU0 | 0.0 | A0A2G9GDU0_9LAMI; Transcription factor NF-X1 | ||||
STRING | XP_009586602.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9395 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G05660.1 | 0.0 | sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors |