PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020853-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-X1
Protein Properties Length: 885aa    MW: 98363.2 Da    PI: 8.3237
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020853-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.21.1e-05233257119
               zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                            CG       H+C+++CH G C+pC+
  SMil_00020853-RA_Salv 233 CGrlleceAHRCGEICHDGLCQPCR 257
                            666666667***************8 PP

2zf-NF-X1186.2e-06399418120
               zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                            CG+H C++ C+ G+CppC++
  SMil_00020853-RA_Salv 399 CGRHACKRRCCDGDCPPCSE 418
                            ******************85 PP

3zf-NF-X117.87.4e-06428445320
               zf-NF-X1   3 kHkCqklCHeGpCppCpq 20 
                            +HkC ++CH+G C pCp+
  SMil_00020853-RA_Salv 428 NHKCPAPCHRGACAPCPL 445
                            7***************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.23E-676148No hitNo description
PROSITE patternPS01359077141IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.46E-5175223No hitNo description
PfamPF014220.0021187204IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0066187205IPR000967Zinc finger, NF-X1-type
CDDcd060082.48E-6229277No hitNo description
PfamPF014220.015233257IPR000967Zinc finger, NF-X1-type
SMARTSM004380.034239258IPR000967Zinc finger, NF-X1-type
CDDcd060082.88E-7282325No hitNo description
PfamPF014220.0084292310IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0021292311IPR000967Zinc finger, NF-X1-type
CDDcd060083.28E-8336385No hitNo description
PfamPF014220.074346365IPR000967Zinc finger, NF-X1-type
SMARTSM0043825346374IPR000967Zinc finger, NF-X1-type
CDDcd060083.25E-8389437No hitNo description
PfamPF014228.6E-4399417IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0092399418IPR000967Zinc finger, NF-X1-type
CDDcd060084.21E-10416464No hitNo description
PfamPF014220.0087426444IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0041426445IPR000967Zinc finger, NF-X1-type
SMARTSM0043825483504IPR000967Zinc finger, NF-X1-type
PfamPF014221.1494503IPR000967Zinc finger, NF-X1-type
PfamPF0142283512521IPR000967Zinc finger, NF-X1-type
SMARTSM0043854512557IPR000967Zinc finger, NF-X1-type
PfamPF014220.19594605IPR000967Zinc finger, NF-X1-type
SMARTSM004381.9594619IPR000967Zinc finger, NF-X1-type
SMARTSM004380.37632650IPR000967Zinc finger, NF-X1-type
PfamPF014220.64634649IPR000967Zinc finger, NF-X1-type
SMARTSM004389.8695716IPR000967Zinc finger, NF-X1-type
PfamPF014221.6697714IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    Send to blast
MLSSATQPPQ LSSDSDSDSD TSSLSHSHQR HPDLSSSIFQ SYLSHSNSRN TGDDLHHQDL  60
IKIQSFLTSS RAGGLSCLIC LERIKPTDPT WSCSARCFAI FHLLCIQSWA HQSTTLAASR  120
ASARAAVAPD ENSFVWPCPK CRVEYPKRQT PKNYYCFCGK VEDPPRDPWV LPHSCGEVCG  180
RSLKYDCGHF CLLLCHPGPC PACPKLVKNK CFCGKLEDVR RCGLKYFSCK GVCGRLLECE  240
AHRCGEICHD GLCQPCRAKG TYRCLCGKEE MARECYEREF RCNGDCKKML SCGRHVCEKG  300
CHEGECGDCP FQGRRTCPCG KRVYEGMACD VSLPLCGATC NKLLSCGFHR CPERCHHGPC  360
VENCRMIVTK PCRCGSFKKQ VPCYQELTCE RKCQKLRDCG RHACKRRCCD GDCPPCSEMC  420
DRKLRCRNHK CPAPCHRGAC APCPLMVRIS CSCGNTHFEV PCGTETEQKP PKCPKPCPVA  480
PLCRHAPKCK VVWCHYGACP PCRLTCGERY SCGHECQLRC HGPIPPPRPE FTLKPKKKKG  540
NYVSEATPGS PCPPCPEVVL RSCFGHHIGA ERMMVCSNSA EFPCDNLCGN PLPCGNHYCT  600
YVCHPMKDHS SKIGESCEVC NLPCHKDRDP ECPHPCPMRC HPGECPPCKA LIRRSCHCGS  660
MVHVFECKYF NCLSEKEQMA VRSCKGPCHR KLPNCTHLCP ETCHPGPCPL PEKCSKKVTV  720
RCGCQTLKKE WLCQDVQAAH ISGGCDPKEI PKNQFGVGLI PCGSDCKSKV KAPDSELHLR  780
QVKPSEAKES DKANTVSKRR RRRQRVHEEE SASRLQKIVG VARRILVLLI VAVAVVVSAY  840
FGEARAVLQR APPRWRARGL EAGANLRAGL VGEEGQHCAY TRPFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1797802KRRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076693.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2G9GDU00.0A0A2G9GDU0_9LAMI; Transcription factor NF-X1
STRINGXP_009586602.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93951921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors