PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020794-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WOX
Protein Properties Length: 138aa    MW: 16164.5 Da    PI: 11.4556
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020794-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-19464257
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+++t+eql +Leel+++  r p+a+++++++++l     ++ + V++WFqN++a++++
  SMil_00020794-RA_Salv  4 NRRWCPTPEQLMVLEELYRRgLRSPNATQIQKITAHLslygTIQGKSVFYWFQNHKARDRQ 64
                           58*****************99****************99999****************996 PP
2Wus_type_Homeobox110.87.2e-36365264
      Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                           ++ RW+PtpeQ+++Leely++Glr+Pn+ +iq+ita+L+ yG i++k VfyWFQN+kaR+rqk
  SMil_00020794-RA_Salv  3 SNRRWCPTPEQLMVLEELYRRGLRSPNATQIQKITAHLSLYGTIQGKSVFYWFQNHKARDRQK 65
                           578***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.171165IPR001356Homeobox domain
SMARTSM003894.5E-6269IPR001356Homeobox domain
SuperFamilySSF466893.55E-11470IPR009057Homeodomain-like
PfamPF000463.1E-17464IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-7564IPR009057Homeodomain-like
CDDcd000865.65E-5565No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MMSNRRWCPT PEQLMVLEEL YRRGLRSPNA TQIQKITAHL SLYGTIQGKS VFYWFQNHKA  60
RDRQKLRHHH FYQSFLFHQG SNGVVMRPTW RSPWSVRRNG HDSAMIMEKG PIPTPRSQPL  120
QTLELFPLTS PTAANHPS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089388.13e-43WUSCHEL-related homeobox 3-like
TrEMBLA0A4D9BWP35e-62A0A4D9BWP3_SALSN; Uncharacterized protein
STRINGAquca_046_00011.12e-37(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-35WOX family protein