PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00020761-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | GRF | ||||||||
Protein Properties | Length: 315aa MW: 34637.9 Da PI: 9.1604 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.6 | 2.9e-25 | 120 | 163 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++ +k+CErH+hrg++rsrk++e SMil_00020761-RA_Salv 120 DPEPGRCRRTDGKKWRCSRDVVAAQKYCERHMHRGKNRSRKPVE 163 79***************************************987 PP | |||||||
2 | QLQ | 40.2 | 1.1e-14 | 54 | 88 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +F+ aQ+q+L+ Q+l++++++ ++ vPpeLl ++ SMil_00020761-RA_Salv 54 YFSSAQWQELELQALIFRHIMGGAAVPPELLHLVK 88 7*****************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.8E-5 | 53 | 89 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 8.0E-11 | 54 | 87 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 17.537 | 54 | 89 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.727 | 120 | 164 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.1E-21 | 121 | 163 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MDFNLKQWRD ESEHETSAKL PKLNSSSSPL PLFVPLSSTA TKLPTPAGMG GGTYFSSAQW 60 QELELQALIF RHIMGGAAVP PELLHLVKKS LVGSPPYYLC NPLHYYHPSS LGYWGKAAMD 120 PEPGRCRRTD GKKWRCSRDV VAAQKYCERH MHRGKNRSRK PVEIPTATAP RFSLSGPLTY 180 VDLHHHNHNP RPMESIPETK CPSQPQNDAG DPTLRHFFHD WPRSLDQAAD DAATNLSIST 240 SDFSLKLGSG SGDGGEGSRS QMNWGMAWEA AHRSAPMGGP LAEALRSSLS TSSSPTSVLH 300 RLQRTSASHT SFVTS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094403.1 | 1e-108 | growth-regulating factor 3 | ||||
TrEMBL | A0A2G9HGY7 | 1e-107 | A0A2G9HGY7_9LAMI; Uncharacterized protein | ||||
STRING | VIT_08s0007g03760.t01 | 1e-103 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3283 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 3e-52 | growth-regulating factor 4 |