PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020705-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 301aa    MW: 32700.1 Da    PI: 5.6508
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020705-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.72e-11960147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                           +++WT eE+  l+ +++++G g W+tI +          R+  ++k++w+++
  SMil_00020705-RA_Salv  9 KQKWTSEEEAALKAGIQKYGIGKWSTILKDPEfstvlRSRSNVDLKDKWRNL 60
                           79************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.38E-16662IPR009057Homeodomain-like
SMARTSM007172.6E-6863IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-14960IPR009057Homeodomain-like
PfamPF002493.5E-7960IPR001005SANT/Myb domain
PROSITE profilePS500907.979961IPR017877Myb-like domain
CDDcd116604.78E-211061No hitNo description
SuperFamilySSF467852.94E-15121196IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.0E-14122187IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.362124192IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.108.8E-16127193IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005386.3E-12129186IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
LESVMGAPKQ KWTSEEEAAL KAGIQKYGIG KWSTILKDPE FSTVLRSRSN VDLKDKWRNL  60
NCMANGLGSR HRARVSIKSS QLTTKQDEDT TSSSMVVYKD MEVLGITSLA ASNEISQDAI  120
SKKKISRLDD VILEAITKLK EPRGSSRPAI NQYIEDNYSA PPELERTLAA NLKILTENGR  180
LIKVKNQYRI APKLITFGAE EEAKLLVENG GGAKKDPFQA ERSGVVLLSK AKIDAELEKM  240
KSMSAEEAAA AAARAVAEAE AAIAEAEAAA REAEEAEADA EAAQCFADAA QKALNYQAIR  300
V
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099387.11e-138telomere repeat-binding factor 1 isoform X3
SwissprotQ9FJW56e-69TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A4D9B7C51e-153A0A4D9B7C5_SALSN; Myb proto-oncogene protein, plant
STRINGMigut.H00343.1.p1e-124(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.23e-67MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]