PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00020705-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB_related | ||||||||
Protein Properties | Length: 301aa MW: 32700.1 Da PI: 5.6508 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.7 | 2e-11 | 9 | 60 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ +++++G g W+tI + R+ ++k++w+++ SMil_00020705-RA_Salv 9 KQKWTSEEEAALKAGIQKYGIGKWSTILKDPEfstvlRSRSNVDLKDKWRNL 60 79************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.38E-16 | 6 | 62 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-6 | 8 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-14 | 9 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-7 | 9 | 60 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.979 | 9 | 61 | IPR017877 | Myb-like domain |
CDD | cd11660 | 4.78E-21 | 10 | 61 | No hit | No description |
SuperFamily | SSF46785 | 2.94E-15 | 121 | 196 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 2.0E-14 | 122 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 22.362 | 124 | 192 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 8.8E-16 | 127 | 193 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 6.3E-12 | 129 | 186 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
LESVMGAPKQ KWTSEEEAAL KAGIQKYGIG KWSTILKDPE FSTVLRSRSN VDLKDKWRNL 60 NCMANGLGSR HRARVSIKSS QLTTKQDEDT TSSSMVVYKD MEVLGITSLA ASNEISQDAI 120 SKKKISRLDD VILEAITKLK EPRGSSRPAI NQYIEDNYSA PPELERTLAA NLKILTENGR 180 LIKVKNQYRI APKLITFGAE EEAKLLVENG GGAKKDPFQA ERSGVVLLSK AKIDAELEKM 240 KSMSAEEAAA AAARAVAEAE AAIAEAEAAA REAEEAEADA EAAQCFADAA QKALNYQAIR 300 V |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099387.1 | 1e-138 | telomere repeat-binding factor 1 isoform X3 | ||||
Swissprot | Q9FJW5 | 6e-69 | TRB2_ARATH; Telomere repeat-binding factor 2 | ||||
TrEMBL | A0A4D9B7C5 | 1e-153 | A0A4D9B7C5_SALSN; Myb proto-oncogene protein, plant | ||||
STRING | Migut.H00343.1.p | 1e-124 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5122 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67580.2 | 3e-67 | MYB_related family protein |
Publications ? help Back to Top | |||
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