PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00020680-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 236aa MW: 27096.5 Da PI: 10.5551 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.1 | 1e-15 | 137 | 222 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+ ++ps+v+ +l l +f+++ + +++ ++l de+g++W v + rk++ l++GWk+F+ +++L +gD +vF+l++ + SMil_00020680-RA_Salv 137 FVRSMLPSHVSGGFWLGLYSDFCRRRL-P-RNDGVVQLVDEEGEEWPVVYLARKTG----LSGGWKKFAVDHNLVDGDALVFQLIKPT 218 778899*****************8883.3.33447***************666665....************************9876 PP EE.. CS B3 89 efel 92 f+ SMil_00020680-RA_Salv 219 VFKV 222 6633 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-21 | 129 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-24 | 130 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.45E-23 | 135 | 226 | No hit | No description |
SMART | SM01019 | 7.0E-22 | 137 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.8E-14 | 137 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.296 | 137 | 228 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
LLKKIGVKMV MAKVKYEAVR QQRLEENKKR IEELHLPLLS QALKDSSSPK PSPMKKTKPR 60 IARTEVVPVR RSLRFSNKSA PEYKEITVYD RVHIPRRMTH KTRDLSNRVY ASDQARDIAM 120 KKAEEIESSL GSNHPSFVRS MLPSHVSGGF WLGLYSDFCR RRLPRNDGVV QLVDEEGEEW 180 PVVYLARKTG LSGGWKKFAV DHNLVDGDAL VFQLIKPTVF KVFIVRVDSE TIKVEL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083863.1 | 1e-137 | B3 domain-containing protein At5g42700 | ||||
Refseq | XP_011083864.1 | 1e-137 | B3 domain-containing protein At5g42700 | ||||
Swissprot | Q9FMZ4 | 9e-71 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A1S3X3J5 | 1e-112 | A0A1S3X3J5_TOBAC; B3 domain-containing protein At5g42700-like | ||||
TrEMBL | A0A1U7X950 | 1e-112 | A0A1U7X950_NICSY; B3 domain-containing protein At5g42700-like | ||||
STRING | XP_009783454.1 | 1e-113 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-68 | B3 family protein |
Publications ? help Back to Top | |||
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