PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00020647-RA_Salv | ||||||||
Common Name | MYB85 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB_related | ||||||||
Protein Properties | Length: 258aa MW: 28798.9 Da PI: 5.281 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 14 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +g+WT+eEd +l ++++ +G g+W+ ++ gRt++++k++w+++ SMil_00020647-RA_Salv 14 KGPWTPEEDAKLTQYIHAHGAGNWRNLPKNAAerlPGRTDNEIKNYWNTH 63 79********************99999988888888************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 5 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.8E-16 | 8 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.771 | 9 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-14 | 13 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-14 | 14 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.96E-15 | 16 | 64 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGRTPCCDKN GLKKGPWTPE EDAKLTQYIH AHGAGNWRNL PKNAAERLPG RTDNEIKNYW 60 NTHIRKRLLR MGIDPVTHAP RLDLLDLSSL FNSPQLSLLR LLNPEALRLA ATLVSSNGGV 120 DAQLMLNSQL QNQLQAAPPI QPNHFENIII DQQIPPNINN NSFHNHQSQY QQVFQDDLMP 180 TANASDFGQI RADLSENSSF QSMNTNSSGS NNNNFNSLSS SPTLNSIGNG GGEDERESFC 240 SDLLRFEIPE SLNFDDFM |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059439 | 0.0 | KF059439.1 Salvia miltiorrhiza MYB-related transcription factor (MYB85) mRNA, complete cds. | |||
GenBank | KF059549 | 0.0 | KF059549.1 Salvia miltiorrhiza MYB-related transcription factor (MYB85) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027172104.1 | 5e-74 | transcription factor MYB102-like | ||||
Refseq | XP_027172105.1 | 5e-74 | transcription factor MYB102-like | ||||
TrEMBL | A0A059PRV9 | 1e-156 | A0A059PRV9_SALMI; MYB-related transcription factor | ||||
STRING | Migut.M00356.1.p | 4e-72 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 5e-38 | myb domain protein 74 |
Publications ? help Back to Top | |||
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