PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020641-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 289aa    MW: 32608.1 Da    PI: 5.8455
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020641-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-192978255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  SMil_00020641-RA_Salv 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFSTAEEAAMAYDEAARRLYG 78
                           69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.62E-322888No hitNo description
Gene3DG3DSA:3.30.730.101.0E-302987IPR001471AP2/ERF domain
SMARTSM003808.5E-372992IPR001471AP2/ERF domain
PROSITE profilePS5103222.6952986IPR001471AP2/ERF domain
PfamPF008474.0E-132978IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-212987IPR016177DNA-binding domain
PRINTSPR003671.5E-103041IPR001471AP2/ERF domain
PRINTSPR003671.5E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MENCRKSPLK PWKKGPARGK GGPQNATCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFS  60
TAEEAAMAYD EAARRLYGPE AYLNLPHLRS NFNPLSKSQK FKWFPSSNFN SKLPSTGLLN  120
LNAQPSVHVI HQRLQELKKS GVLGQDYSSS SSSSDPKNDV HILSEEPRLE IPEATEKDTE  180
FSSQSKAITS DDKPQIDLNE FLQQLGVLKG EGHQPCESDN TSKNFTEIES LSFKDDEEDG  240
FGTCAANNFN WDTLSEIAEA DIHLGADTTT FHAHDSNEEL FFHPSIWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-183086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075213.11e-164dehydration-responsive element-binding protein 2F
SwissprotQ9SVX54e-87DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A4D9B3Q70.0A0A4D9B3Q7_SALSN; Uncharacterized protein
STRINGMigut.J01780.1.p1e-150(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70982329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.14e-78ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]