PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020530-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 520aa    MW: 57761.9 Da    PI: 6.1578
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020530-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.41.3e-1341505201374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l++lL +cA+avs+ d  +aq+l+++l++l+s +g p+qRl ay++e+L a l+ s+s++ k+l+ +e +   s e l+++++++ev+
  SMil_00020530-RA_Salv 150 LKQLLAACAKAVSNCDWLMAQWLMSELRQLVSVSGAPVQRLGAYMLEGLVALLSASGSSIGKSLKLREPA---SFELLSYMHMLYEVC 234
                            679******************************************************************9...9************** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                            P++kf+++ aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTgv++++s   +   l+ +g+rLak+A++++v
  SMil_00020530-RA_Salv 235 PYFKFGYMSANGAIAEAMKDENRVHIIDFQIGQGSQWVPLIQAFAARPGGPPHIRITGVDDATSAyaRGGGLNMVGRRLAKLAHSFKV 322
                            *************************************************************999899999****************** PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            pf f++ v     +++ e+L ++ gEalaVn++++lhr+ desvs+e++rd++L++vk+l+Pkvv++ve+e+++n++ F  rf+eal+
  SMil_00020530-RA_Salv 323 PFTFHA-VPMPACEVRAESLGIRAGEALAVNFAFMLHRMADESVSTENHRDRLLRMVKGLNPKVVTLVEHELNTNTAAFYPRFVEALD 409
                            ******.799999*************************************************************************** PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                            yy+a+f+s++++l+r+++eri+vE+++l+r++vn++acegaer+erhe  +kWr+rl++aGF+p pls+ +++++k+ll+++ ++ y+
  SMil_00020530-RA_Salv 410 YYTAMFESIDVTLARDHKERINVEQHCLARDVVNIIACEGAERVERHEPHGKWRSRLTMAGFSPCPLSSLVNATIKTLLQNYCDR-YS 496
                            ***********************************************************************************66.** PP

                   GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                            + e++g+l+lgW +r Lv++SaW+
  SMil_00020530-RA_Salv 497 LAERDGALFLGWLNRDLVAASAWK 520
                            ***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.981124501IPR005202Transcription factor GRAS
PfamPF035144.6E-132150520IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MSNTWYCQPL RKIEAYSLQQ CQPLNHQQLW SYNNISNGNG CSILVSQDRF CTLESSTLTS  60
ASTVSLSPNE SSLSQQESQS YPAGLLQVNE GCAAEEEDVD ELKHKLKELE TVMFAPDVDI  120
LDDSGVSTRL ASAEIDSWRQ LMEVIPRGDL KQLLAACAKA VSNCDWLMAQ WLMSELRQLV  180
SVSGAPVQRL GAYMLEGLVA LLSASGSSIG KSLKLREPAS FELLSYMHML YEVCPYFKFG  240
YMSANGAIAE AMKDENRVHI IDFQIGQGSQ WVPLIQAFAA RPGGPPHIRI TGVDDATSAY  300
ARGGGLNMVG RRLAKLAHSF KVPFTFHAVP MPACEVRAES LGIRAGEALA VNFAFMLHRM  360
ADESVSTENH RDRLLRMVKG LNPKVVTLVE HELNTNTAAF YPRFVEALDY YTAMFESIDV  420
TLARDHKERI NVEQHCLARD VVNIIACEGA ERVERHEPHG KWRSRLTMAG FSPCPLSSLV  480
NATIKTLLQN YCDRYSLAER DGALFLGWLN RDLVAASAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-601525206375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100624.10.0scarecrow-like protein 21
RefseqXP_011100625.10.0scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A4D8ZUX10.0A0A4D8ZUX1_SALSN; Uncharacterized protein
STRINGPOPTR_0014s16230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]