PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00020530-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | GRAS | ||||||||
Protein Properties | Length: 520aa MW: 57761.9 Da PI: 6.1578 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 440.4 | 1.3e-134 | 150 | 520 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 l++lL +cA+avs+ d +aq+l+++l++l+s +g p+qRl ay++e+L a l+ s+s++ k+l+ +e + s e l+++++++ev+ SMil_00020530-RA_Salv 150 LKQLLAACAKAVSNCDWLMAQWLMSELRQLVSVSGAPVQRLGAYMLEGLVALLSASGSSIGKSLKLREPA---SFELLSYMHMLYEVC 234 679******************************************************************9...9************** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174 P++kf+++ aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTgv++++s + l+ +g+rLak+A++++v SMil_00020530-RA_Salv 235 PYFKFGYMSANGAIAEAMKDENRVHIIDFQIGQGSQWVPLIQAFAARPGGPPHIRITGVDDATSAyaRGGGLNMVGRRLAKLAHSFKV 322 *************************************************************999899999****************** PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 pf f++ v +++ e+L ++ gEalaVn++++lhr+ desvs+e++rd++L++vk+l+Pkvv++ve+e+++n++ F rf+eal+ SMil_00020530-RA_Salv 323 PFTFHA-VPMPACEVRAESLGIRAGEALAVNFAFMLHRMADESVSTENHRDRLLRMVKGLNPKVVTLVEHELNTNTAAFYPRFVEALD 409 ******.799999*************************************************************************** PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350 yy+a+f+s++++l+r+++eri+vE+++l+r++vn++acegaer+erhe +kWr+rl++aGF+p pls+ +++++k+ll+++ ++ y+ SMil_00020530-RA_Salv 410 YYTAMFESIDVTLARDHKERINVEQHCLARDVVNIIACEGAERVERHEPHGKWRSRLTMAGFSPCPLSSLVNATIKTLLQNYCDR-YS 496 ***********************************************************************************66.** PP GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374 + e++g+l+lgW +r Lv++SaW+ SMil_00020530-RA_Salv 497 LAERDGALFLGWLNRDLVAASAWK 520 ***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.981 | 124 | 501 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.6E-132 | 150 | 520 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence Send to blast |
MSNTWYCQPL RKIEAYSLQQ CQPLNHQQLW SYNNISNGNG CSILVSQDRF CTLESSTLTS 60 ASTVSLSPNE SSLSQQESQS YPAGLLQVNE GCAAEEEDVD ELKHKLKELE TVMFAPDVDI 120 LDDSGVSTRL ASAEIDSWRQ LMEVIPRGDL KQLLAACAKA VSNCDWLMAQ WLMSELRQLV 180 SVSGAPVQRL GAYMLEGLVA LLSASGSSIG KSLKLREPAS FELLSYMHML YEVCPYFKFG 240 YMSANGAIAE AMKDENRVHI IDFQIGQGSQ WVPLIQAFAA RPGGPPHIRI TGVDDATSAY 300 ARGGGLNMVG RRLAKLAHSF KVPFTFHAVP MPACEVRAES LGIRAGEALA VNFAFMLHRM 360 ADESVSTENH RDRLLRMVKG LNPKVVTLVE HELNTNTAAF YPRFVEALDY YTAMFESIDV 420 TLARDHKERI NVEQHCLARD VVNIIACEGA ERVERHEPHG KWRSRLTMAG FSPCPLSSLV 480 NATIKTLLQN YCDRYSLAER DGALFLGWLN RDLVAASAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-60 | 152 | 520 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100624.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_011100625.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A4D8ZUX1 | 0.0 | A0A4D8ZUX1_SALSN; Uncharacterized protein | ||||
STRING | POPTR_0014s16230.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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