PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020529-RA_Salv
Common NameWRKY41
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 292aa    MW: 32200.6 Da    PI: 8.8186
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020529-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.31.4e-27144201260
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                            dDgynWrKYGqK vkg++f rsYY+Ct+++C++kk+ve+s+ d+   +i Y g+H+h+k
  SMil_00020529-RA_Salv 144 DDGYNWRKYGQKLVKGNKFVRSYYKCTYPNCQAKKQVEKSH-DGCKSDINYLGNHHHQK 201
                            8****************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.551138202IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-24141202IPR003657WRKY domain
SMARTSM007743.0E-28143201IPR003657WRKY domain
SuperFamilySSF1182903.14E-22143202IPR003657WRKY domain
PfamPF031069.0E-21144200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
LTQSSQPVKV LEKLQPRRNP DAGGCSSKHD QVTISSGHSE KLSAVPKEER RPHNSQARQC  60
IHDRNHASLD KEEKGTNTKG ESVQVSSLSM GVPIPEPGQE SYAYSTKFEK VEKLQPRRNL  120
DSVVQESHAD VGSTPSKAPD KGFDDGYNWR KYGQKLVKGN KFVRSYYKCT YPNCQAKKQV  180
EKSHDGCKSD INYLGNHHHQ KPLQSPQVTT TFQVRTPEMP IASTSKPNVE PITKNASSDQ  240
HMAETSPKSV VGRSADGLSG ATSCSNNDTK DLDDCPDPKR QKRGISSADD DV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-151432021777Probable WRKY transcription factor 4
2lex_A4e-151432021777Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231640.0KM823164.1 Salvia miltiorrhiza WRKY protein (WRKY41) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100622.11e-118WRKY transcription factor 1 isoform X1
RefseqXP_011100623.11e-118WRKY transcription factor 1 isoform X2
TrEMBLA0A0D5Y9B20.0A0A0D5Y9B2_SALMI; WRKY protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.25e-26zinc-dependent activator protein-1