PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00020501-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

CPP

Protein Properties

Length: 371aa MW: 41180.9 Da PI: 8.4281

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00020501-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	42.4	1.4e-13	145	184	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+C+Ck+s+Clk+YCeCf++g++C+ C+C +C Nk+e+ SMil_00020501-RA_Salv 145 KQKQCRCKNSRCLKLYCECFSSGVYCDG-CNCINCYNKKEN 184 89************************.*******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.6E-14	144	184	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	14.452	145	203	IPR005172	CRC domain
Pfam	PF03638	1.5E-10	146	181	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MSMEQREGAA APVVRQLDFT VNFMSAAANA NGKGSPMDQS QPKWLAAGNS QHAHAIAGSP 60 QSPSRSQLAQ TKFPPRKMVM PPKSPHRELP QMEVRAQSPL IAPRLSHPVG KPVPTPKRAL 120 QPLMKMESPK SRERNPEQND GTPKKQKQCR CKNSRCLKLY CECFSSGVYC DGCNCINCYN 180 KKENEADRKE AIDAVLERKP DAFYGEPCFT SETPYSPSFV QPSKSDPTKL GVSKSSYRSP 240 LSGILQLQHV KDFCKLLVEV STEAAKSLPD ERKMIDGGID VNRVETSVGH HEDRTLALMC 300 DEQDATFMAA NAPSTVTESN TRTQLKSESA LGPNQLYVEQ ERLVLTRLRC FLNRLITCGS 360 IEETRVEQEI P

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MSMEQREGAA APVVRQLDFT VNFMSAAANA NGKGSPMDQS QPKWLAAGNS QHAHAIAGSP  60
QSPSRSQLAQ TKFPPRKMVM PPKSPHRELP QMEVRAQSPL IAPRLSHPVG KPVPTPKRAL  120
QPLMKMESPK SRERNPEQND GTPKKQKQCR CKNSRCLKLY CECFSSGVYC DGCNCINCYN  180
KKENEADRKE AIDAVLERKP DAFYGEPCFT SETPYSPSFV QPSKSDPTKL GVSKSSYRSP  240
LSGILQLQHV KDFCKLLVEV STEAAKSLPD ERKMIDGGID VNRVETSVGH HEDRTLALMC  300
DEQDATFMAA NAPSTVTESN TRTQLKSESA LGPNQLYVEQ ERLVLTRLRC FLNRLITCGS  360
IEETRVEQEI P

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090506.2	9e-66	protein tesmin/TSO1-like CXC 5
TrEMBL	A0A4D9AT95	1e-107	A0A4D9AT95_SALSN; Uncharacterized protein
STRING	Migut.A00224.1.p	1e-57	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20110.2	3e-31	Tesmin/TSO1-like CXC domain-containing protein