PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00020369-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 169aa MW: 18923.5 Da PI: 10.1999

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00020369-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.9	9.6e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeel+v+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+r++ky++g+r+nra++sgyWkatg+ SMil_00020369-RA_Salv 15 LPPGFRFHPTDEELLVHYLKKKAAAAPLPV-AIIAEVDLYKYDPWELPSKASFGEQEWYFFSPRERKYPNGERPNRAATSGYWKATGT 101 79**************************.88***********988899****************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++l++ ++++ g+kk Lvfy g+ pkg+kt+W+mheyrl SMil_00020369-RA_Salv 102 DKPILTAnGTQKLGVKKALVFYGGKPPKGVKTNWIMHEYRL 142 *9867778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.27E-59	11	148	IPR003441	NAC domain
PROSITE profile	PS51005	56.596	15	168	IPR003441	NAC domain
Pfam	PF02365	2.8E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MEGTSSSGGN HQPRLPPGFR FHPTDEELLV HYLKKKAAAA PLPVAIIAEV DLYKYDPWEL 60 PSKASFGEQE WYFFSPRERK YPNGERPNRA ATSGYWKATG TDKPILTANG TQKLGVKKAL 120 VFYGGKPPKG VKTNWIMHEY RLVGDNSTAN KPPGINLPKK SSSRVYNYI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-66	12	143	14	143	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-66	12	143	14	143	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-66	12	143	14	143	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-66	12	143	14	143	NO APICAL MERISTEM PROTEIN
3swm_A	8e-66	12	143	17	146	NAC domain-containing protein 19
3swm_B	8e-66	12	143	17	146	NAC domain-containing protein 19
3swm_C	8e-66	12	143	17	146	NAC domain-containing protein 19
3swm_D	8e-66	12	143	17	146	NAC domain-containing protein 19
3swp_A	8e-66	12	143	17	146	NAC domain-containing protein 19
3swp_B	8e-66	12	143	17	146	NAC domain-containing protein 19
3swp_C	8e-66	12	143	17	146	NAC domain-containing protein 19
3swp_D	8e-66	12	143	17	146	NAC domain-containing protein 19
4dul_A	7e-66	12	143	14	143	NAC domain-containing protein 19
4dul_B	7e-66	12	143	14	143	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096265.1	1e-105	NAC transcription factor 25
Swissprot	Q8GY42	6e-87	NAC25_ARATH; NAC transcription factor 25
TrEMBL	A0A2G9HQE1	3e-99	A0A2G9HQE1_9LAMI; Uncharacterized protein
STRING	Solyc07g063420.2.1	3e-96	(Solanum lycopersicum)
STRING	XP_009769986.1	4e-96	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1814	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-77	NAC domain containing protein 25