PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00020360-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 143aa MW: 16417 Da PI: 8.9842 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39 | 1.5e-12 | 49 | 113 | 12 | 79 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 k++ l+lpk+ +e + +k + +++ de+gr+W+v+++ +k+s r+ ++GWk+ ++an ++ gDf SMil_00020360-RA_Salv 49 KKNVLYLPKRVIEYYHLK--IPNVISFVDEQGREWDVTVSKDKGSYRC-SAGGWKRVCEANLIDIGDF 113 6788********888888..6779***************555555554.357***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.49E-12 | 35 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.2E-12 | 37 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.939 | 38 | 142 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0036 | 42 | 130 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-10 | 49 | 113 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.63E-9 | 53 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MDTPPHPHRR RVPSTRRNKK LEDDAEISEP GLAVPPEIPC FAWRAKPAKK NVLYLPKRVI 60 EYYHLKIPNV ISFVDEQGRE WDVTVSKDKG SYRCSAGGWK RVCEANLIDI GDFEAKLHIV 120 VMVTSSCRDR PSDRKILILC GEY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 3e-09 | B3 family protein |