PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00020272-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 186aa MW: 20714.1 Da PI: 8.8435 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 9.5e-18 | 98 | 148 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp k+ r++lg+++ta +Aa+a++ a+ k++g SMil_00020272-RA_Salv 98 RYRGVRRRP-WGKYAAEIRDP---ArKSNRVWLGTYDTAVDAARAYDCAAFKIRG 148 7********.**********8...5567*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.566 | 98 | 156 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 98 | 148 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-35 | 98 | 162 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-31 | 98 | 157 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 98 | 158 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.0E-13 | 99 | 110 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.97E-23 | 106 | 156 | No hit | No description |
PRINTS | PR00367 | 2.0E-13 | 138 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MMANSDEGLT LDFIRQHLFE DFSFADSFFD TLDVCFSDVV AAASPSSMSD SSSDPNRPDS 60 DFRHDFFDVE TKPHICPPKR AKPDSVGVGS DPVMAWRRYR GVRRRPWGKY AAEIRDPARK 120 SNRVWLGTYD TAVDAARAYD CAAFKIRGSK AILNFPMDAG KSEPPASAGR RRRREKRADG 180 GANPAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-26 | 97 | 163 | 4 | 70 | ATERF1 |
3gcc_A | 6e-26 | 97 | 163 | 4 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 175 | RRRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858579.1 | 1e-66 | PREDICTED: ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | A0A2U8UYM9 | 1e-130 | A0A2U8UYM9_SALMI; Ethylene-responsive transcription factor ERF6 | ||||
STRING | Migut.F00526.1.p | 6e-66 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 2e-20 | ERF family protein |