PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020263-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 327aa    MW: 35976.1 Da    PI: 8.4427
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020263-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07266307443
                            S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
        Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                            WT+ Ed  l++a k ++++   +W+++a+ ++ g+t   c+ r
  SMil_00020263-RA_Salv 266 WTAAEDVALLNALKAFPKEvamRWEKVAASVP-GKTKAACVAR 307
                            ********************************.*******877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.506177218IPR017877Myb-like domain
SuperFamilySSF466893.28E-5179222IPR009057Homeodomain-like
SMARTSM007170.0014181234IPR001005SANT/Myb domain
SMARTSM007172.2E-5262314IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-8263310IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-5264316IPR009057Homeodomain-like
CDDcd001672.29E-6266312No hitNo description
PfamPF002493.7E-6266307IPR001005SANT/Myb domain
PROSITE profilePS500906.609266312IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
LVTTKYSEQY SLPGGTWLDC SKSMEFLDEY ESKPRFLFQS KNLPDDSLHP SSFSLSSLHK  60
PTLFISLSLS LLLFCLALIY FNFEPLQSLL LWLSLSLLVG PFAPPSLTAG DIRVGLGPPL  120
QEIPDAPLET IEKPSRKSTK SVRKAIEDAE GEGNSNPIDA SRVDLTKQRS ARPIEASVEA  180
KSEEWGEADD EMLKKLMGKH PVGKPGRWEA IAEGFKGKHK VETVIAKAKH VGDKKGGDQD  240
SYSKFLKDRE KRHVDEEGRK ESGSGWTAAE DVALLNALKA FPKEVAMRWE KVAASVPGKT  300
KAACVARMAE LKKDFRSSKA SASAQLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082375.11e-120dnaJ homolog subfamily C member 2-like
RefseqXP_011082376.11e-120dnaJ homolog subfamily C member 2-like
TrEMBLA0A4D9BMJ41e-142A0A4D9BMJ4_SALSN; Uncharacterized protein
STRINGMigut.A01004.1.p1e-107(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126681011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.11e-61MYB_related family protein