PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020230-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 198aa    MW: 21991.6 Da    PI: 5.4055
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020230-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-1754104155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            + y+GVr +  + +Wv+e+r+p++   +kr++lg++ t+e+Aa+a++ a+++l+g
  SMil_00020230-RA_Salv  54 PVYRGVRLRN-SDKWVCELREPRQ---QKRIWLGTYPTPEMAARAHDLAALALRG 104
                            68*****999.7*********943...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-1354104IPR001471AP2/ERF domain
PROSITE profilePS5103220.91655112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2855114IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2055114IPR016177DNA-binding domain
SMARTSM003802.1E-2555118IPR001471AP2/ERF domain
CDDcd000187.68E-2656114No hitNo description
PRINTSPR003676.0E-75667IPR001471AP2/ERF domain
PRINTSPR003676.0E-77894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MQFFTNSSND PASLSRTPEF PETTPSHSDE EAIPAAAQPK RRAGRKKFKE TRHPVYRGVR  60
LRNSDKWVCE LREPRQQKRI WLGTYPTPEM AARAHDLAAL ALRGSAACLN FADSAWRLPV  120
PSSTDAKELR KAAAAAAEAF RPEERRDDGA GMYDICEASG VAALAEGVLL SPPPFLGCQF  180
SWDEVESDAE VDLELWNF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835461.11e-78PREDICTED: dehydration-responsive element-binding protein 1E-like
SwissprotQ9LN869e-57DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLA0A4D9A8G42e-90A0A4D9A8G4_SALSN; EREBP-like factor
STRINGMigut.A00920.1.p6e-78(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.18e-41ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]