PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020204-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 988aa    MW: 111941 Da    PI: 8.2775
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020204-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.3e-09428472246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g+WT+ Ed+ l++ +++ G  +W  Ia+ +g++Rt+ qc  r+q 
  SMil_00020204-RA_Salv 428 GPWTAMEDKNLLHIIQEKGLINWIDIAASLGTNRTPFQCLARYQR 472
                            89*****************************************96 PP
2Myb_DNA-binding38.62.5e-12481526248
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              WT e+d +l  a++ +G  +W ++a+ m  gR + qc +rw+k l
  SMil_00020204-RA_Salv 481 REWTNEDDNKLRAAIETYGESNWQAVANAME-GRRGTQCSNRWLKTL 526
                            68*****************************.***********9975 PP
3Myb_DNA-binding54.72.4e-17534578247
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            g+WT eEd++l+ av+++G++tW+++a++++ gRt  qc++rw + 
  SMil_00020204-RA_Salv 534 GKWTLEEDKRLKVAVTLFGPKTWRKVANCVP-GRTHVQCRERWVNC 578
                            89*****************************.***********986 PP
4Myb_DNA-binding43.47.7e-14587629347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             WT+eEd++l +a++++G   W+++a++++ +Rt++ c  rw  +
  SMil_00020204-RA_Salv 587 EWTEEEDLKLEEAIAKHGYC-WSKVAACIP-HRTDNLCLRRWKVL 629
                            7*****************99.*********.***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.761322421IPR017877Myb-like domain
SMARTSM007173.9E-4326423IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-10329345IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-10394433IPR009057Homeodomain-like
SuperFamilySSF466894.9E-11402463IPR009057Homeodomain-like
PROSITE profilePS500909.047422474IPR017877Myb-like domain
SMARTSM007172.1E-8426476IPR001005SANT/Myb domain
PfamPF002492.1E-8428472IPR001005SANT/Myb domain
CDDcd001672.61E-6429474No hitNo description
Gene3DG3DSA:1.10.10.602.6E-12434480IPR009057Homeodomain-like
SuperFamilySSF466899.28E-19456529IPR009057Homeodomain-like
PROSITE profilePS5129418.245475530IPR017930Myb domain
SMARTSM007177.5E-13479528IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-14481529IPR009057Homeodomain-like
PfamPF002494.4E-11481525IPR001005SANT/Myb domain
CDDcd001672.61E-10482526No hitNo description
SuperFamilySSF466891.52E-26532626IPR009057Homeodomain-like
SMARTSM007173.2E-13532581IPR001005SANT/Myb domain
PROSITE profilePS5129413.772532579IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-20534584IPR009057Homeodomain-like
PfamPF002495.9E-15534578IPR001005SANT/Myb domain
CDDcd001679.85E-11535577No hitNo description
PROSITE profilePS5129422.115580634IPR017930Myb domain
SMARTSM007172.1E-13584632IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-17585628IPR009057Homeodomain-like
CDDcd001671.17E-10587630No hitNo description
PfamPF002492.6E-12587628IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 988 aa     Download sequence    Send to blast
MSSSKGVSDS DSDSDDGFNE DMEALRRACQ LTGETPASTA AAGGIASEAS SSEGESDGDE  60
DNDLQLVRSI QNRFAVPMDM GEEPLKMKPL CTVLPDLSDS DDIEEDYETL RAIQRRFAAY  120
NDGSLKDNFE GFSHRPEQVG ATIIDSEKET SNSFVERTNA REGFLNCVDT SEPTGKKVEV  180
CDNAGGSSDT VEWNELGVDD VAELPLRTSH FPNSALAFVD AIKKNRSCQK LIRSKMMQME  240
ARMEELGKLI ERVRILKDFQ VDCKKRRGRA LSQKKDHRVQ LISVPKLKAN MKPNEKNIPA  300
SYKGPRENVH VPNYKEALAT FSIPFNKEKW SKEERENLLK GVKQQFQEML LQQSVDDLYS  360
EADGYYDSSN VDNMMKSIKD CDITPERMRQ FSPKVNWDQL AAMYVPRRTG AECQARFFNS  420
EDPLINHGPW TAMEDKNLLH IIQEKGLINW IDIAASLGTN RTPFQCLARY QRSLNASILK  480
REWTNEDDNK LRAAIETYGE SNWQAVANAM EGRRGTQCSN RWLKTLHPTR ERSGKWTLEE  540
DKRLKVAVTL FGPKTWRKVA NCVPGRTHVQ CRERWVNCLD PSLNKAEWTE EEDLKLEEAI  600
AKHGYCWSKV AACIPHRTDN LCLRRWKVLF PADVPQLQTA RKITKAALIS NFVDRESERP  660
ALGPKDFQLP ETLRIAGNEN VDPSMRKRKR SRRRGVRQRN EDDTLSGETY SEEVLRLTDG  720
SELEIQGRSM RRAGRHKSSR LRKSNARPSS DIHLSGGPET RLLDIPEGEE ITEIHVSDGN  780
NMRKSQPRKK RSGKNPTTSV AVMGDEACTK QYEHFDPIEE PTPDVPLDAE LGGDNAMITQ  840
IAKASKLQPR RRNSQVLKEV QQTKPEAPRQ AETKRQMKKD KKLTNATNDH PSSLSEDTKA  900
TEAGCMKEKI VNSPRKRKKS SQILILYQRK RQKTGDGACS KQMLVKEGFR SDDHACQNQA  960
SEVEVGDGMT LAQFLQQTKE KRKLKTPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-303996266155MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-303996266155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1914918RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084456.10.0uncharacterized protein LOC105166700 isoform X1
RefseqXP_020552481.10.0uncharacterized protein LOC105166700 isoform X1
RefseqXP_020552485.10.0uncharacterized protein LOC105166700 isoform X1
TrEMBLA0A4D8Z1Z00.0A0A4D8Z1Z0_SALSN; Myb proto-oncogene protein, plant
STRINGMigut.D01451.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108762124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-180myb domain protein 4r1