PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020094-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 350aa    MW: 39365.1 Da    PI: 6.9759
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020094-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH474.3e-15273297226
                            -S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                            ktelC+ +++tG C+yG++C+FaHg
  SMil_00020094-RA_Salv 273 KTELCNKWQETGACPYGENCQFAHG 297
                            9***********************8 PP
2zf-CCCH19.91.3e-06310335126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            ykte Cr  +++  C+yG rC+F H+
  SMil_00020094-RA_Salv 310 YKTEVCRMVLAGDVCPYGHRCHFRHS 335
                            9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.4E-18267304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-11268303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.155271299IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-9271298IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-12273297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-9305340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-12305338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.188309337IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-5309336IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
LLTAFCSYII LILFFSFSIS ITPTISTFFF EMQREDISYD SLIATSAGDK SAAASLLFSY  60
SNPFLSPTSP TYVNSDASFY SSLFQNYSSN SASDTASFDG SDTDRRLQDA SCVMEYQQLY  120
NRYTLCLAQL HDSIEEADAL RRDNESLRLS NADLSHRIAL LFSRDRLLSD FNRLNVASPS  180
VAVPRAAHLT ATQPLAEHNR VERRNTERVT LPKSISVRTS GYLKMTRPGR DTAGDKAVSQ  240
PTAALREQQR VYVGGSTKEN GEELDVYNQG MTKTELCNKW QETGACPYGE NCQFAHGINE  300
LRPVIRHPRY KTEVCRMVLA GDVCPYGHRC HFRHSLTEQE RLMAVQPPPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-22273338570Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100111.11e-174zinc finger CCCH domain-containing protein 14
TrEMBLA0A4D9BVN20.0A0A4D9BVN2_SALSN; Butyrate response factor 1
STRINGMigut.L00491.1.p1e-147(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.15e-70C3H family protein