PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00019994-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 248aa MW: 28111.4 Da PI: 7.218 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.3 | 5.3e-18 | 63 | 116 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k SMil_00019994-RA_Salv 63 KKRRLNLEQVKALEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 116 4557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.8 | 2.7e-42 | 62 | 153 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++alk++n++L++++++L+ SMil_00019994-RA_Salv 62 EKKRRLNLEQVKALEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDILKRQFEALKADNDSLKSQNKKLQ 149 69************************************************************************************** PP HD-ZIP_I/II 89 eelk 92 ++l+ SMil_00019994-RA_Salv 150 NQLS 153 9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.37E-19 | 48 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.763 | 58 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.1E-18 | 61 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.40E-15 | 63 | 119 | No hit | No description |
Pfam | PF00046 | 2.9E-15 | 63 | 116 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-19 | 65 | 125 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.0E-6 | 89 | 98 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.0E-6 | 98 | 114 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.6E-15 | 118 | 156 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MAYVPAESMF RNHDVDAHFP SSSPQDFHGV PEFLMRRSMS FSGMDRAEDD EGSDDGSQML 60 GEKKRRLNLE QVKALEKSFE LGNKLEPERK MQLARALGLQ PRQIAIWFQN RRARWKTKQL 120 EKDYDILKRQ FEALKADNDS LKSQNKKLQN QLSGMKRRGE AGAGAGAINL NKENEGSWSN 180 GSDTSCEVNL KASTEYNQRS KHAAAAMFPA AATLAHHSLP AECFGNMFGG IEETPQEFWP 240 WSEQQNFH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 118 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098601.1 | 1e-121 | homeobox-leucine zipper protein HOX21 | ||||
Swissprot | Q8LC03 | 2e-69 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A4D9BTZ8 | 1e-135 | A0A4D9BTZ8_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Migut.H00906.1.p | 1e-107 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-67 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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