PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00019965-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 216aa MW: 25262.5 Da PI: 10.3296 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.4 | 5.2e-13 | 20 | 101 | 13 | 97 |
TT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 13 sgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + l +p f+++h + ++ l+l+++ g sW vk+ +k g +++++GW++Fvk+n++ e ++F+ s +v +f SMil_00019965-RA_Salv 20 ETKLKIPAAFVKDHglHLLPRL--SLQLKTQPGrASWAVKI--KKINGDFYIADGWSQFVKDNDILEMKLLIFYIAAASAL--RVAIF 101 44599*********66444555..59999955549******..99999**************************6553444..77776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.194 | 8 | 104 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.31E-14 | 10 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.58E-10 | 12 | 101 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-15 | 18 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.3E-4 | 19 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-10 | 21 | 101 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.04E-8 | 117 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.065 | 118 | 216 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-8 | 118 | 206 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
LSCRNQMAKS FMMFCYHDFE TKLKIPAAFV KDHGLHLLPR LSLQLKTQPG RASWAVKIKK 60 INGDFYIADG WSQFVKDNDI LEMKLLIFYI AAASALRVAI FGHDSCLELP PSSRGVDRPR 120 FDFVLTQARK YRTYLFHEFA EKADLMDKKS VVLQFPPKRR HWPVLVQKNR LRRRCTLELT 180 QGWVDFRVAN GLVYGRRYSF EFDSAENVIL VKELKN |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6635 | 9 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18960.1 | 9e-09 | B3 family protein |