PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019943-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 337aa    MW: 36524 Da    PI: 4.717
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019943-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.25e-19126175255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  SMil_00019943-RA_Salv 126 KFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDHAAIQLRG 175
                            89*******.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.4E-30125183IPR001471AP2/ERF domain
SMARTSM003801.3E-36126189IPR001471AP2/ERF domain
CDDcd000181.86E-30126182No hitNo description
PfamPF008474.9E-12126175IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-21126183IPR016177DNA-binding domain
PROSITE profilePS5103223.63126183IPR001471AP2/ERF domain
PRINTSPR003673.6E-10127138IPR001471AP2/ERF domain
PRINTSPR003673.6E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MQEELAMFKY SEHVTQTTVV NRRENPLSGR KSPFPARTVR FSVTDADATD SSSDEEEGFT  60
VKRQRVRKFI NEVRIQPCCR DDNGVVTGNA AVHGGLNGAV RVSRPALKRK KSGGAGRTAA  120
AGGARKFRGV RQRPWGKWAA EIRDPLRRVR LWLGTYDTAE EAAMVYDHAA IQLRGPDALT  180
NFSAPAPAHH SIASSGYNSG EESSHNNAKS PKSVLRFVSA ADSQAEAEAA EAEAEAESSC  240
AFPQNDAVAS GENDVENFSD FPIFPTSDDI FAEFENPASL FDQTAGFSDD IFGMDFCSSD  300
LLIGSSTDFG LGSSSWQTDD FFHDFGDIFG SDPLVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18125182462ATERF1
3gcc_A2e-18125182462ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296391e-42KP229639.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF16) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080873.11e-155ethylene-responsive transcription factor CRF2
TrEMBLA0A4D8YXL81e-150A0A4D8YXL8_SALSN; Uncharacterized protein
STRINGMigut.A00686.1.p1e-124(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-34cytokinin response factor 2