PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00019941-RA_Salv | ||||||||
Common Name | MYB27 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 10002.5 Da PI: 9.3632 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++ +G+g +W + + ++g++R++k+c++rw++yl SMil_00019941-RA_Salv 14 RGPWSPEEDAKLKSYIENHGTGgNWIALPPKIGLKRCGKSCRLRWLNYL 62 89**********************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.428 | 9 | 66 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-21 | 12 | 61 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.05E-19 | 15 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.29E-9 | 16 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 62 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 89 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDAKLKSYIE NHGTGGNWIA LPPKIGLKRC GKSCRLRWLN 60 YLRPNLKHGG FTEDEDNLIC SLYISIGSR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF059381 | 1e-147 | KF059381.1 Salvia miltiorrhiza MYB-related transcription factor (MYB27) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004498936.1 | 2e-59 | transcription factor RAX3-like isoform X2 | ||||
Swissprot | Q9M2Y9 | 6e-58 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A059PRQ1 | 5e-59 | A0A059PRQ1_SALMI; MYB-related transcription factor | ||||
TrEMBL | A0A1S2Y3W0 | 5e-58 | A0A1S2Y3W0_CICAR; transcription factor RAX3-like isoform X2 | ||||
TrEMBL | V5K203 | 3e-59 | V5K203_SALMI; R2R3 MYB transcription factor 87 (Fragment) | ||||
STRING | GLYMA17G16980.1 | 1e-58 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49690.1 | 3e-60 | myb domain protein 84 |
Publications ? help Back to Top | |||
---|---|---|---|
|