PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00019923-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 179aa MW: 19732.6 Da PI: 4.3853 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.2e-17 | 11 | 60 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g++v+eIr p++ r r++lg+++tae Aa+a +aa +l+g SMil_00019923-RA_Salv 11 KYRGVRKRK-WGKYVSEIRLPNS---RERIWLGSYDTAERAARAFDAALFCLRG 60 8*****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.02E-25 | 10 | 70 | No hit | No description |
SMART | SM00380 | 4.6E-32 | 11 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.7E-10 | 11 | 60 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.733 | 11 | 68 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-29 | 11 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-20 | 11 | 69 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.0E-10 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-10 | 34 | 50 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MTDTAAEAAA KYRGVRKRKW GKYVSEIRLP NSRERIWLGS YDTAERAARA FDAALFCLRG 60 RSANFNFPDD PPDIPGGESL SAPEIQAVAQ SYGNSYGGAA ADGFRGRASR DAATGLDGAE 120 AVDLVDGSFW EMVDNAGCVS DSRGFAEAAE MYVVDPHYEA RVYEDDDVEY CYDHRLWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-17 | 10 | 70 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022848905.1 | 2e-53 | ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q84QC2 | 5e-41 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A4D8ZP08 | 7e-71 | A0A4D8ZP08_SALSN; Uncharacterized protein | ||||
STRING | Migut.A00330.1.p | 1e-50 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1939 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-29 | ERF family protein |
Publications ? help Back to Top | |||
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