PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019922-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 175aa    MW: 19341.4 Da    PI: 4.4915
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019922-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-18958255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +y+GVr +k +g++v+eIr p++   r r++lg++gt+e+Aa+a +aa  +l+g
  SMil_00019922-RA_Salv  9 KYRGVRKRK-WGKYVSEIRLPNS---RERIWLGSYGTPEKAARAFDAALFCLRG 58
                           8*****999.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-28967IPR001471AP2/ERF domain
PfamPF008476.3E-11958IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-20967IPR016177DNA-binding domain
SMARTSM003806.4E-32972IPR001471AP2/ERF domain
CDDcd000181.72E-26968No hitNo description
PROSITE profilePS5103221.219966IPR001471AP2/ERF domain
PRINTSPR003674.8E-91021IPR001471AP2/ERF domain
PRINTSPR003674.8E-93248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAEGGGGGKY RGVRKRKWGK YVSEIRLPNS RERIWLGSYG TPEKAARAFD AALFCLRGRT  60
AKFNFPDDPP DIPGGESLSP PEIQVVAQRY ANSWGAGPQA ATGGGGDGGF RARASEDSAT  120
VDLIDGSFWE MVDNAGCVAD FGLFVEPGEM YMDPYYETRV YEDEDECYDH RLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-16168174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022848905.12e-59ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC22e-46ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A4D8Y8U73e-68A0A4D8Y8U7_SALSN; EREBP-like factor
TrEMBLA0A4D8ZP082e-68A0A4D8ZP08_SALSN; Uncharacterized protein
STRINGMigut.A00330.1.p4e-53(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-34ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]